Gene name: EDC2
Reference locus (S288C): YER035W
Gene biotype: protein_coding
Description: Enhancer of mRNA-decapping protein 2; RNA-binding protein that directly activates mRNA decapping; binds mRNA substrate and enhances activity of decapping proteins Dcp1p and Dcp2p; has a role in translation during heat stress; protein increases in abundance and relocalizes to nucleolus and to nuclear foci upon DNA replication stress; EDC2 has a paralog, EDC1, that arose from the whole genome duplication
Top 10 interactors (score): EDC3 (0.946); EDC1 (0.939); DHH1 (0.897); DCP2 (0.895); DCP1 (0.893); LSM1 (0.779); DCS1 (0.769); SCD6 (0.749); XRN1 (0.747); YJL144W (0.732); YRA1 (0.682); UPF3 (0.656); NAM7 (0.655); CDC39 (0.618); NMD2 (0.614); HSP42 (0.609); KRI1 (0.601); MAK5 (0.6); LSM2 (0.599); TMC1 (0.593)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:216669-217106:+ | gene-YER035W_AKU4011 | rna-NM_001178926.3_AKU4011 | cds-NP_010952.3_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:208619-209056:- | gene-YER035W_BG1 | rna-NM_001178926.3_BG1 | cds-NP_010952.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:225557-225994:+ | gene-YER035W_Bruggeman | rna-NM_001178926.3_Bruggeman | cds-NP_010952.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:219691-220128:+ | gene-YER035W_CAT1 | rna-NM_001178926.3_CAT1 | cds-NP_010952.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:216594-217031:+ | gene-YER035W_CBS1585 | rna-NM_001178926.3_CBS1585 | cds-NP_010952.3_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:218541-218978:+ | gene-YER035W_CBS436 | rna-NM_001178926.3_CBS436 | cds-NP_010952.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:216836-217273:+ | gene-YER035W_CBS6412 | rna-NM_001178926.3_CBS6412 | cds-NP_010952.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:222079-222516:+ | gene-YER035W_CBS6413 | rna-NM_001178926.3_CBS6413 | cds-NP_010952.3_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:220576-221013:+ | gene-YER035W_CENPK1137D | rna-NM_001178926.3_CENPK1137D | cds-NP_010952.3_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:217297-217734:+ | gene-YER035W_EthanolRed | rna-NM_001178926.3_EthanolRed | cds-NP_010952.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:217562-217999:+ | gene-YER035W_FaliES1 | rna-NM_001178926.3_FaliES1 | cds-NP_010952.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:15339-15776:+ | gene-YER035W_JAY291 | rna-NM_001178926.3_JAY291 | cds-NP_010952.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:221001-221438:+ | gene-YER035W_MUCL30387 | rna-NM_001178926.3_MUCL30387 | cds-NP_010952.3_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:217218-217655:+ | gene-YER035W_MUCL30388 | rna-NM_001178926.3_MUCL30388 | cds-NP_010952.3_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:215635-216072:+ | gene-YER035W_MUCL39482 | rna-NM_001178926.3_MUCL39482 | cds-NP_010952.3_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:222730-223167:+ | gene-YER035W_MUCL42920 | rna-NM_001178926.3_MUCL42920 | cds-NP_010952.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:222638-223075:+ | gene-YER035W_NCIM3186 | rna-NM_001178926.3_NCIM3186 | cds-NP_010952.3_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:220705-221142:+ | gene-YER035W_NCYC1407 | rna-NM_001178926.3_NCYC1407 | cds-NP_010952.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:231348-231785:+ | gene-YER035W_PE2H3 | rna-NM_001178926.3_PE2H3 | cds-NP_010952.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:221289-221726:+ | gene-YER035W_PE2H4 | rna-NM_001178926.3_PE2H4 | cds-NP_010952.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:222639-223076:+ | gene-YER035W_S288C | rna-NM_001178926.3_S288C | cds-NP_010952.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:20605-21042:- | gene-YER035W_SA1 | rna-NM_001178926.3_SA1 | cds-NP_010952.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:218333-218770:+ | gene-YER035W_ThermosaccDry | rna-NM_001178926.3_ThermosaccDry | cds-NP_010952.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:217444-217881:+ | gene-YER035W_VR1 | rna-NM_001178926.3_VR1 | cds-NP_010952.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:215542-215979:+ | gene-YER035W_ZTW1 | rna-NM_001178926.3_ZTW1 | cds-NP_010952.3_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:219404-219838:+ | gene-YER035W_Sparadoxus | rna-NM_001178926.3_Sparadoxus | cds-NP_010952.3_Sparadoxus | 85.6 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |