Gene name: EDC1
Reference locus (S288C): YGL222C
Gene biotype: protein_coding
Description: Enhancer of mRNA-decapping protein 1; RNA-binding protein that activates mRNA decapping directly; binds to mRNA substrate and enhances activity of decapping proteins Dcp1p and Dcp2p; has a role in translation during heat stress; protein becomes more abundant and forms cytoplasmic foci in response to DNA replication stress; EDC1 has a paralog, EDC2, that arose from the whole genome duplication
Top 10 interactors (score): EDC2 (0.939); DCP1 (0.877); DCP2 (0.82); EDC3 (0.81); DHH1 (0.775); LSM1 (0.747); XRN1 (0.617); POP2 (0.575); CCR4 (0.575); YGR126W (0.568); YOR062C (0.525); YGL242C (0.499); YDR132C (0.499); YDL109C (0.491); YHR210C (0.487); RBG2 (0.485); YCR101C (0.485); TMA10 (0.485); MPO1 (0.485); YJR120W (0.483)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:82001-82528:- | gene-YGL222C_AKU4011 | rna-NM_001181087.1_AKU4011 | cds-NP_011293.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:75064-75591:- | gene-YGL222C_BG1 | rna-NM_001181087.1_BG1 | cds-NP_011293.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:82511-83038:- | gene-YGL222C_Bruggeman | rna-NM_001181087.1_Bruggeman | cds-NP_011293.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:81174-81701:- | gene-YGL222C_CAT1 | rna-NM_001181087.1_CAT1 | cds-NP_011293.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:86306-86833:- | gene-YGL222C_CBS1585 | rna-NM_001181087.1_CBS1585 | cds-NP_011293.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:81868-82395:- | gene-YGL222C_CBS436 | rna-NM_001181087.1_CBS436 | cds-NP_011293.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:73437-73964:- | gene-YGL222C_CBS6412 | rna-NM_001181087.1_CBS6412 | cds-NP_011293.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:80141-80668:- | gene-YGL222C_CBS6413 | rna-NM_001181087.1_CBS6413 | cds-NP_011293.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:80693-81220:- | gene-YGL222C_CENPK1137D | rna-NM_001181087.1_CENPK1137D | cds-NP_011293.1_CENPK1137D | 98.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:72803-73330:- | gene-YGL222C_EthanolRed | rna-NM_001181087.1_EthanolRed | cds-NP_011293.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:73646-74173:- | gene-YGL222C_FaliES1 | rna-NM_001181087.1_FaliES1 | cds-NP_011293.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000397.1:50-577:- | gene-YGL222C_JAY291 | rna-NM_001181087.1_JAY291 | cds-NP_011293.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:82427-82954:- | gene-YGL222C_MUCL30387 | rna-NM_001181087.1_MUCL30387 | cds-NP_011293.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:84606-85133:- | gene-YGL222C_MUCL30388 | rna-NM_001181087.1_MUCL30388 | cds-NP_011293.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:82819-83346:- | gene-YGL222C_MUCL39482 | rna-NM_001181087.1_MUCL39482 | cds-NP_011293.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:85925-86452:- | gene-YGL222C_MUCL42920 | rna-NM_001181087.1_MUCL42920 | cds-NP_011293.1_MUCL42920 | 96.7 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:80659-81186:- | gene-YGL222C_NCIM3186 | rna-NM_001181087.1_NCIM3186 | cds-NP_011293.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:74538-75065:- | gene-YGL222C_NCYC1407 | rna-NM_001181087.1_NCYC1407 | cds-NP_011293.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:77367-77894:- | gene-YGL222C_PE2H3 | rna-NM_001181087.1_PE2H3 | cds-NP_011293.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:76915-77442:- | gene-YGL222C_PE2H4 | rna-NM_001181087.1_PE2H4 | cds-NP_011293.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:80659-81186:- | gene-YGL222C_S288C | rna-NM_001181087.1_S288C | cds-NP_011293.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:294101-294628:+ | gene-YGL222C_SA1 | rna-NM_001181087.1_SA1 | cds-NP_011293.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:73907-74434:- | gene-YGL222C_ThermosaccDry | rna-NM_001181087.1_ThermosaccDry | cds-NP_011293.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:81784-82307:- | gene-YGL222C_VR1 | rna-NM_001181087.1_VR1 | cds-NP_011293.1_VR1 | 97.7 | 99.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:72956-73483:- | gene-YGL222C_ZTW1 | rna-NM_001181087.1_ZTW1 | cds-NP_011293.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:80011-80538:- | gene-YGL222C_Sparadoxus | rna-NM_001181087.1_Sparadoxus | cds-NP_011293.1_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |