Gene name: ECM32
Reference locus (S288C): YER176W
Gene biotype: protein_coding
Description: Putative ATP-dependent RNA helicase ECM32; DNA dependent ATPase/DNA helicase; helicase belonging to the Dna2p- and Nam7p-like family of helicases that is involved in modulating translation termination; interacts with the translation termination factors, localized to polysomes
Top 10 interactors (score): FAL1 (0.943); EST1 (0.919); EBS1 (0.919); NMD2 (0.917); SUP35 (0.872); SUP45 (0.851); XRN1 (0.846); MAL11 (0.828); UPF3 (0.828); TAD1 (0.796); TOR2 (0.776); TOR1 (0.776); ITT1 (0.776); MPH3 (0.76); MAL31 (0.76); SGN1 (0.749); DCP2 (0.737); DHR2 (0.731); MPH2 (0.73); STO1 (0.714)
Homologues (species, bitscore): UPF1 (Homo sapiens, 245.7); Upf1 (Mus musculus, 245.4); upf1 (Danio rerio, 245.7); upf1 (Xenopus tropicalis, 148.7); Upf1 (Drosophila melanogaster, 244.6); smg-2 (Caenorhabditis elegans, 234.6); LBA1 (Arabidopsis thaliana, 252.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:523211-526576:+ | gene-YER176W_AKU4011 | rna-NM_001179066.1_AKU4011 | cds-NP_011103.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:6791-10156:- | gene-YER176W_BG1 | rna-NM_001179066.1_BG1 | cds-NP_011103.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:535957-539322:+ | gene-YER176W_Bruggeman | rna-NM_001179066.1_Bruggeman | cds-NP_011103.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:522541-525906:+ | gene-YER176W_CAT1 | rna-NM_001179066.1_CAT1 | cds-NP_011103.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:523018-526383:+ | gene-YER176W_CBS1585 | rna-NM_001179066.1_CBS1585 | cds-NP_011103.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:532909-536274:+ | gene-YER176W_CBS436 | rna-NM_001179066.1_CBS436 | cds-NP_011103.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:520995-524360:+ | gene-YER176W_CBS6412 | rna-NM_001179066.1_CBS6412 | cds-NP_011103.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:529564-532929:+ | gene-YER176W_CBS6413 | rna-NM_001179066.1_CBS6413 | cds-NP_011103.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:539459-542824:+ | gene-YER176W_CENPK1137D | rna-NM_001179066.1_CENPK1137D | cds-NP_011103.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:529187-532552:+ | gene-YER176W_EthanolRed | rna-NM_001179066.1_EthanolRed | cds-NP_011103.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:530123-533488:+ | gene-YER176W_FaliES1 | rna-NM_001179066.1_FaliES1 | cds-NP_011103.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000169.1:6422-9787:- | gene-YER176W_JAY291 | rna-NM_001179066.1_JAY291 | cds-NP_011103.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:523272-526637:+ | gene-YER176W_MUCL30387 | rna-NM_001179066.1_MUCL30387 | cds-NP_011103.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:526185-529550:+ | gene-YER176W_MUCL30388 | rna-NM_001179066.1_MUCL30388 | cds-NP_011103.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:518976-522341:+ | gene-YER176W_MUCL39482 | rna-NM_001179066.1_MUCL39482 | cds-NP_011103.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:533504-536869:+ | gene-YER176W_MUCL42920 | rna-NM_001179066.1_MUCL42920 | cds-NP_011103.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:541689-545054:+ | gene-YER176W_NCIM3186 | rna-NM_001179066.1_NCIM3186 | cds-NP_011103.1_NCIM3186 | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:528431-531796:+ | gene-YER176W_NCYC1407 | rna-NM_001179066.1_NCYC1407 | cds-NP_011103.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:544363-547728:+ | gene-YER176W_PE2H3 | rna-NM_001179066.1_PE2H3 | cds-NP_011103.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:534304-537669:+ | gene-YER176W_PE2H4 | rna-NM_001179066.1_PE2H4 | cds-NP_011103.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:541690-545055:+ | gene-YER176W_S288C | rna-NM_001179066.1_S288C | cds-NP_011103.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:93843-97208:+ | gene-YER176W_SA1 | rna-NM_001179066.1_SA1 | cds-NP_011103.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:530923-534288:+ | gene-YER176W_ThermosaccDry | rna-NM_001179066.1_ThermosaccDry | cds-NP_011103.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:524207-527572:+ | gene-YER176W_VR1 | rna-NM_001179066.1_VR1 | cds-NP_011103.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000011.1:43773-47138:+ | gene-YER176W_ZTW1 | rna-NM_001179066.1_ZTW1 | cds-NP_011103.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:532172-535540:+ | gene-YER176W_Sparadoxus | rna-NM_001179066.1_Sparadoxus | cds-NP_011103.1_Sparadoxus | 88.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |