Gene name: ECM23
Reference locus (S288C): YPL021W
Gene biotype: protein_coding
Description: Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p
Top 10 interactors (score): YGR126W (0.711); GAT3 (0.705); PAU7 (0.697); YOR062C (0.696); YHR210C (0.678); YJR120W (0.671); THO1 (0.671); CRP1 (0.63); BCH1 (0.574); YBL029C-A (0.574); NNR2 (0.564); MSI1 (0.556); RSC30 (0.552); BAS1 (0.53); DAN4 (0.526); MCM1 (0.508); ARG80 (0.508); SMP1 (0.498); RLM1 (0.498); PRE10 (0.497)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:482590-483153:+ | gene-YPL021W_AKU4011 | rna-NM_001183835.1_AKU4011 | cds-NP_015304.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:414191-414754:- | gene-YPL021W_BG1 | rna-NM_001183835.1_BG1 | cds-NP_015304.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:559540-560103:+ | gene-YPL021W_Bruggeman | rna-NM_001183835.1_Bruggeman | cds-NP_015304.1_Bruggeman | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:599204-599767:+ | gene-YPL021W_CAT1 | rna-NM_001183835.1_CAT1 | cds-NP_015304.1_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:486662-487225:+ | gene-YPL021W_CBS1585 | rna-NM_001183835.1_CBS1585 | cds-NP_015304.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:500790-501353:+ | gene-YPL021W_CBS436 | rna-NM_001183835.1_CBS436 | cds-NP_015304.1_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:490853-491416:+ | gene-YPL021W_CBS6412 | rna-NM_001183835.1_CBS6412 | cds-NP_015304.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:483215-483778:+ | gene-YPL021W_CBS6413 | rna-NM_001183835.1_CBS6413 | cds-NP_015304.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:511074-511637:+ | gene-YPL021W_CENPK1137D | rna-NM_001183835.1_CENPK1137D | cds-NP_015304.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:480954-481517:+ | gene-YPL021W_EthanolRed | rna-NM_001183835.1_EthanolRed | cds-NP_015304.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:488784-489347:+ | gene-YPL021W_FaliES1 | rna-NM_001183835.1_FaliES1 | cds-NP_015304.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:97386-97949:+ | gene-YPL021W_JAY291 | rna-NM_001183835.1_JAY291 | cds-NP_015304.1_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:500488-501051:+ | gene-YPL021W_MUCL30387 | rna-NM_001183835.1_MUCL30387 | cds-NP_015304.1_MUCL30387 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:499596-500159:+ | gene-YPL021W_MUCL30388 | rna-NM_001183835.1_MUCL30388 | cds-NP_015304.1_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:479980-480543:+ | gene-YPL021W_MUCL39482 | rna-NM_001183835.1_MUCL39482 | cds-NP_015304.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:539108-539671:+ | gene-YPL021W_MUCL42920 | rna-NM_001183835.1_MUCL42920 | cds-NP_015304.1_MUCL42920 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:511084-511647:+ | gene-YPL021W_NCIM3186 | rna-NM_001183835.1_NCIM3186 | cds-NP_015304.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:487256-487819:+ | gene-YPL021W_NCYC1407 | rna-NM_001183835.1_NCYC1407 | cds-NP_015304.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:493914-494477:+ | gene-YPL021W_PE2H3 | rna-NM_001183835.1_PE2H3 | cds-NP_015304.1_PE2H3 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:493529-494092:+ | gene-YPL021W_PE2H4 | rna-NM_001183835.1_PE2H4 | cds-NP_015304.1_PE2H4 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:511101-511664:+ | gene-YPL021W_S288C | rna-NM_001183835.1_S288C | cds-NP_015304.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:7779-8342:+ | gene-YPL021W_SA1 | rna-NM_001183835.1_SA1 | cds-NP_015304.1_SA1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:488583-489146:+ | gene-YPL021W_ThermosaccDry | rna-NM_001183835.1_ThermosaccDry | cds-NP_015304.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:503471-504034:+ | gene-YPL021W_VR1 | rna-NM_001183835.1_VR1 | cds-NP_015304.1_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:487871-488433:+ | gene-YPL021W_ZTW1 | rna-NM_001183835.1_ZTW1 | cds-NP_015304.1_ZTW1 | 99.6 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:487832-488395:+ | gene-YPL021W_Sparadoxus | rna-NM_001183835.1_Sparadoxus | cds-NP_015304.1_Sparadoxus | 84.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |