Gene name: ECM2
Reference locus (S288C): YBR065C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor SLT11; Pre-mRNA splicing factor; facilitates the cooperative formation of U2/U6 helix II in association with stem II in the spliceosome, function may be regulated by Slu7p; Belongs to the SLT11 family
Top 10 interactors (score): PRP45 (0.999); CDC40 (0.999); CEF1 (0.999); CWC2 (0.999); PRP16 (0.999); CLF1 (0.999); BRR2 (0.999); PRP8 (0.999); SNU114 (0.999); LEA1 (0.999); PRP22 (0.999); SYF1 (0.999); BUD31 (0.999); PRP46 (0.999); HUB1 (0.999); SYF2 (0.999); PRP19 (0.999); CWC22 (0.998); SNT309 (0.998); ISY1 (0.997)
Homologues (species, bitscore): RBM22 (Homo sapiens, 79.7); Rbm22 (Mus musculus, 79.7); Rbm22 (Danio rerio, 80.1); rbm22 (Xenopus tropicalis, 80.9); CG14641 (Drosophila melanogaster, 80.9); T11G6.8 (Caenorhabditis elegans, 83.6); MAC5B (Arabidopsis thaliana, 85.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:351001-352095:- | gene-YBR065C_AKU4011 | rna-NM_001178413.3_AKU4011 | cds-NP_009621.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:341258-342352:- | gene-YBR065C_BG1 | rna-NM_001178413.3_BG1 | cds-NP_009621.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:351992-353086:- | gene-YBR065C_Bruggeman | rna-NM_001178413.3_Bruggeman | cds-NP_009621.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:355504-356598:- | gene-YBR065C_CAT1 | rna-NM_001178413.3_CAT1 | cds-NP_009621.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:343282-344376:- | gene-YBR065C_CBS1585 | rna-NM_001178413.3_CBS1585 | cds-NP_009621.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:351359-352453:- | gene-YBR065C_CBS436 | rna-NM_001178413.3_CBS436 | cds-NP_009621.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:441500-442594:- | gene-YBR065C_CBS6412 | rna-NM_001178413.3_CBS6412 | cds-NP_009621.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:348406-349500:- | gene-YBR065C_CBS6413 | rna-NM_001178413.3_CBS6413 | cds-NP_009621.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:362346-363440:- | gene-YBR065C_CENPK1137D | rna-NM_001178413.3_CENPK1137D | cds-NP_009621.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:477769-478863:- | gene-YBR065C_EthanolRed | rna-NM_001178413.3_EthanolRed | cds-NP_009621.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:367047-368141:- | gene-YBR065C_FaliES1 | rna-NM_001178413.3_FaliES1 | cds-NP_009621.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000124.1:14984-16078:- | gene-YBR065C_JAY291 | rna-NM_001178413.3_JAY291 | cds-NP_009621.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:353358-354452:- | gene-YBR065C_MUCL30387 | rna-NM_001178413.3_MUCL30387 | cds-NP_009621.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:353372-354466:- | gene-YBR065C_MUCL30388 | rna-NM_001178413.3_MUCL30388 | cds-NP_009621.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:343270-344364:- | gene-YBR065C_MUCL39482 | rna-NM_001178413.3_MUCL39482 | cds-NP_009621.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:350491-351585:- | gene-YBR065C_MUCL42920 | rna-NM_001178413.3_MUCL42920 | cds-NP_009621.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:368381-369475:- | gene-YBR065C_NCIM3186 | rna-NM_001178413.3_NCIM3186 | cds-NP_009621.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:344188-345282:- | gene-YBR065C_NCYC1407 | rna-NM_001178413.3_NCYC1407 | cds-NP_009621.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:356433-357527:- | gene-YBR065C_PE2H3 | rna-NM_001178413.3_PE2H3 | cds-NP_009621.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:354109-355203:- | gene-YBR065C_PE2H4 | rna-NM_001178413.3_PE2H4 | cds-NP_009621.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:368584-369678:- | gene-YBR065C_S288C | rna-NM_001178413.3_S288C | cds-NP_009621.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:107821-108915:+ | gene-YBR065C_SA1 | rna-NM_001178413.3_SA1 | cds-NP_009621.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:366058-367152:- | gene-YBR065C_ThermosaccDry | rna-NM_001178413.3_ThermosaccDry | cds-NP_009621.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:348051-349145:- | gene-YBR065C_VR1 | rna-NM_001178413.3_VR1 | cds-NP_009621.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:341745-342839:- | gene-YBR065C_ZTW1 | rna-NM_001178413.3_ZTW1 | cds-NP_009621.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:378846-379943:- | gene-YBR065C_Sparadoxus | rna-NM_001178413.3_Sparadoxus | cds-NP_009621.3_Sparadoxus | 87.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |