Gene name: ECM16
Reference locus (S288C): YMR128W
Gene biotype: protein_coding
Description: Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP; predominantly nucleolar in distribution; required for 18S rRNA synthesis
Top 10 interactors (score): ERB1 (0.999); MTR4 (0.999); PWP2 (0.999); UTP15 (0.999); NAN1 (0.999); NOP56 (0.999); ROK1 (0.999); RRP9 (0.999); DIP2 (0.999); UTP5 (0.999); UTP13 (0.999); UTP8 (0.999); NOP58 (0.999); TSR1 (0.999); IMP4 (0.999); UTP18 (0.999); DBP8 (0.999); HAS1 (0.999); RRP12 (0.999); UTP25 (0.999)
Homologues (species, bitscore): DHX37 (Homo sapiens, 613.6); Dhx37 (Mus musculus, 629.4); dhx37 (Danio rerio, 623.2); LOC734015 (Xenopus tropicalis, 589.0); kz (Drosophila melanogaster, 585.1); rha-2 (Caenorhabditis elegans, 558.5); FAS4 (Arabidopsis thaliana, 553.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:563195-566998:+ | gene-YMR128W_AKU4011 | rna-NM_001182629.1_AKU4011 | cds-NP_013847.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:105535-109338:- | gene-YMR128W_BG1 | rna-NM_001182629.1_BG1 | cds-NP_013847.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:506376-510179:+ | gene-YMR128W_Bruggeman | rna-NM_001182629.1_Bruggeman | cds-NP_013847.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:508590-512393:+ | gene-YMR128W_CAT1 | rna-NM_001182629.1_CAT1 | cds-NP_013847.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:496118-499921:+ | gene-YMR128W_CBS1585 | rna-NM_001182629.1_CBS1585 | cds-NP_013847.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:499991-503794:+ | gene-YMR128W_CBS436 | rna-NM_001182629.1_CBS436 | cds-NP_013847.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:609111-612914:+ | gene-YMR128W_CBS6412 | rna-NM_001182629.1_CBS6412 | cds-NP_013847.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:494678-498481:+ | gene-YMR128W_CBS6413 | rna-NM_001182629.1_CBS6413 | cds-NP_013847.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:518210-522013:+ | gene-YMR128W_CENPK1137D | rna-NM_001182629.1_CENPK1137D | cds-NP_013847.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:494308-498111:+ | gene-YMR128W_EthanolRed | rna-NM_001182629.1_EthanolRed | cds-NP_013847.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:500249-504052:+ | gene-YMR128W_FaliES1 | rna-NM_001182629.1_FaliES1 | cds-NP_013847.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000294.1:22938-26741:- | gene-YMR128W_JAY291 | rna-NM_001182629.1_JAY291 | cds-NP_013847.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:501101-504904:+ | gene-YMR128W_MUCL30387 | rna-NM_001182629.1_MUCL30387 | cds-NP_013847.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:506627-510430:+ | gene-YMR128W_MUCL30388 | rna-NM_001182629.1_MUCL30388 | cds-NP_013847.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:496819-500622:+ | gene-YMR128W_MUCL39482 | rna-NM_001182629.1_MUCL39482 | cds-NP_013847.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:503114-506917:+ | gene-YMR128W_MUCL42920 | rna-NM_001182629.1_MUCL42920 | cds-NP_013847.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:523650-527453:+ | gene-YMR128W_NCIM3186 | rna-NM_001182629.1_NCIM3186 | cds-NP_013847.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:496457-500260:+ | gene-YMR128W_NCYC1407 | rna-NM_001182629.1_NCYC1407 | cds-NP_013847.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:506893-510696:+ | gene-YMR128W_PE2H3 | rna-NM_001182629.1_PE2H3 | cds-NP_013847.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:507347-511150:+ | gene-YMR128W_PE2H4 | rna-NM_001182629.1_PE2H4 | cds-NP_013847.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:523696-527499:+ | gene-YMR128W_S288C | rna-NM_001182629.1_S288C | cds-NP_013847.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:43776-47579:- | gene-YMR128W_SA1 | rna-NM_001182629.1_SA1 | cds-NP_013847.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:496706-500509:+ | gene-YMR128W_ThermosaccDry | rna-NM_001182629.1_ThermosaccDry | cds-NP_013847.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:509395-513198:+ | gene-YMR128W_VR1 | rna-NM_001182629.1_VR1 | cds-NP_013847.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:471851-475654:+ | gene-YMR128W_ZTW1 | rna-NM_001182629.1_ZTW1 | cds-NP_013847.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:508169-511999:+ | gene-YMR128W_Sparadoxus | rna-NM_001182629.1_Sparadoxus | cds-NP_013847.1_Sparadoxus | 88.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |