Gene name: ECM11
Reference locus (S288C): YDR446W
Gene biotype: protein_coding
Description: Meiosis-specific protein; component of the Synaptonemal Complex (SC) along with Gmc2p; required for efficient crossover formation and for the efficient loading of the SC transverse filament protein, Zip1p; is SUMOlytaed in a Gmc2p manner, and SUMOylation is required for its function in meiosis; GFP fusion protein is present in discrete clusters in the nucleus throughout mitosis; may be involved in maintaining chromatin structure
Top 10 interactors (score): GMC2 (0.975); ZIP1 (0.896); SPO22 (0.888); NFI1 (0.836); MSH4 (0.835); SPO16 (0.814); CST9 (0.812); SPO11 (0.787); ZIP2 (0.78); RED1 (0.76); NDT80 (0.717); YHR202W (0.713); YMR147W (0.691); PHO92 (0.683); YDR018C (0.678); SMT3 (0.677); YHR127W (0.618); DMC1 (0.613); HOP2 (0.597); ULP2 (0.574)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1293629-1294537:+ | gene-YDR446W_AKU4011 | rna-NM_001180754.1_AKU4011 | cds-NP_010734.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:171986-172894:+ | gene-YDR446W_BG1 | rna-NM_001180754.1_BG1 | cds-NP_010734.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1325088-1325996:+ | gene-YDR446W_Bruggeman | rna-NM_001180754.1_Bruggeman | cds-NP_010734.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1302223-1303131:+ | gene-YDR446W_CAT1 | rna-NM_001180754.1_CAT1 | cds-NP_010734.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1287936-1288844:+ | gene-YDR446W_CBS1585 | rna-NM_001180754.1_CBS1585 | cds-NP_010734.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1307305-1308213:+ | gene-YDR446W_CBS436 | rna-NM_001180754.1_CBS436 | cds-NP_010734.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1283574-1284482:+ | gene-YDR446W_CBS6412 | rna-NM_001180754.1_CBS6412 | cds-NP_010734.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1306575-1307483:+ | gene-YDR446W_CBS6413 | rna-NM_001180754.1_CBS6413 | cds-NP_010734.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1352379-1353287:+ | gene-YDR446W_CENPK1137D | rna-NM_001180754.1_CENPK1137D | cds-NP_010734.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1296999-1297907:+ | gene-YDR446W_EthanolRed | rna-NM_001180754.1_EthanolRed | cds-NP_010734.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1300550-1301458:+ | gene-YDR446W_FaliES1 | rna-NM_001180754.1_FaliES1 | cds-NP_010734.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000263.1:44800-45708:+ | gene-YDR446W_JAY291 | rna-NM_001180754.1_JAY291 | cds-NP_010734.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1307563-1308471:+ | gene-YDR446W_MUCL30387 | rna-NM_001180754.1_MUCL30387 | cds-NP_010734.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1289587-1290495:+ | gene-YDR446W_MUCL30388 | rna-NM_001180754.1_MUCL30388 | cds-NP_010734.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1279427-1280335:+ | gene-YDR446W_MUCL39482 | rna-NM_001180754.1_MUCL39482 | cds-NP_010734.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1222225-1223133:+ | gene-YDR446W_MUCL42920 | rna-NM_001180754.1_MUCL42920 | cds-NP_010734.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1353648-1354556:+ | gene-YDR446W_NCIM3186 | rna-NM_001180754.1_NCIM3186 | cds-NP_010734.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1293192-1294100:+ | gene-YDR446W_NCYC1407 | rna-NM_001180754.1_NCYC1407 | cds-NP_010734.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1304043-1304951:+ | gene-YDR446W_PE2H3 | rna-NM_001180754.1_PE2H3 | cds-NP_010734.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1309601-1310509:+ | gene-YDR446W_PE2H4 | rna-NM_001180754.1_PE2H4 | cds-NP_010734.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1353725-1354633:+ | gene-YDR446W_S288C | rna-NM_001180754.1_S288C | cds-NP_010734.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000082.1:2928-3836:- | gene-YDR446W_SA1 | rna-NM_001180754.1_SA1 | cds-NP_010734.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1304774-1305682:+ | gene-YDR446W_ThermosaccDry | rna-NM_001180754.1_ThermosaccDry | cds-NP_010734.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1320511-1321419:+ | gene-YDR446W_VR1 | rna-NM_001180754.1_VR1 | cds-NP_010734.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:347430-348338:+ | gene-YDR446W_ZTW1 | rna-NM_001180754.1_ZTW1 | cds-NP_010734.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1307859-1308764:+ | gene-YDR446W_Sparadoxus | rna-NM_001180754.1_Sparadoxus | cds-NP_010734.1_Sparadoxus | 88.3 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |