Gene name: ECM1
Reference locus (S288C): YAL059W
Gene biotype: protein_coding
Description: Shuttling pre-60S factor ECM1; Pre-ribosomal factor involved in 60S ribosomal protein subunit export; associates with the pre-60S particle; shuttles between the nucleus and cytoplasm; Belongs to the ECM1 family
Top 10 interactors (score): ARX1 (0.999); NMD3 (0.997); MRT4 (0.997); NOG1 (0.997); NOG2 (0.996); ALB1 (0.995); RLP24 (0.995); NSA2 (0.995); NUG1 (0.995); CIC1 (0.993); BUD20 (0.993); RRS1 (0.992); MAK16 (0.992); RPF2 (0.992); NIP7 (0.99); BRX1 (0.99); NOP15 (0.988); YBL028C (0.985); EBP2 (0.985); DBP3 (0.985)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:21657-22295:+ | gene-YAL059W_AKU4011 | rna-NM_001178201.2_AKU4011 | cds-NP_009342.2_AKU4011 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:8721-9359:+ | gene-YAL059W_BG1 | rna-NM_001178201.2_BG1 | cds-NP_009342.2_BG1 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:35862-36500:+ | gene-YAL059W_Bruggeman | rna-NM_001178201.2_Bruggeman | cds-NP_009342.2_Bruggeman | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:22373-23011:+ | gene-YAL059W_CAT1 | rna-NM_001178201.2_CAT1 | cds-NP_009342.2_CAT1 | 99.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:34677-35315:+ | gene-YAL059W_CBS1585 | rna-NM_001178201.2_CBS1585 | cds-NP_009342.2_CBS1585 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:34917-35555:+ | gene-YAL059W_CBS436 | rna-NM_001178201.2_CBS436 | cds-NP_009342.2_CBS436 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:20820-21458:+ | gene-YAL059W_CBS6412 | rna-NM_001178201.2_CBS6412 | cds-NP_009342.2_CBS6412 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:32941-33579:+ | gene-YAL059W_CBS6413 | rna-NM_001178201.2_CBS6413 | cds-NP_009342.2_CBS6413 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:36565-37203:+ | gene-YAL059W_CENPK1137D | rna-NM_001178201.2_CENPK1137D | cds-NP_009342.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:23070-23708:+ | gene-YAL059W_EthanolRed | rna-NM_001178201.2_EthanolRed | cds-NP_009342.2_EthanolRed | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:37013-37651:+ | gene-YAL059W_FaliES1 | rna-NM_001178201.2_FaliES1 | cds-NP_009342.2_FaliES1 | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:8959-9597:+ | gene-YAL059W_JAY291 | rna-NM_001178201.2_JAY291 | cds-NP_009342.2_JAY291 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:37616-38254:+ | gene-YAL059W_MUCL30387 | rna-NM_001178201.2_MUCL30387 | cds-NP_009342.2_MUCL30387 | 98.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:34159-34797:+ | gene-YAL059W_MUCL30388 | rna-NM_001178201.2_MUCL30388 | cds-NP_009342.2_MUCL30388 | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:33480-34118:+ | gene-YAL059W_MUCL39482 | rna-NM_001178201.2_MUCL39482 | cds-NP_009342.2_MUCL39482 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:35819-36457:+ | gene-YAL059W_MUCL42920 | rna-NM_001178201.2_MUCL42920 | cds-NP_009342.2_MUCL42920 | 99.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:36386-37024:+ | gene-YAL059W_NCIM3186 | rna-NM_001178201.2_NCIM3186 | cds-NP_009342.2_NCIM3186 | 98.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:21343-21981:+ | gene-YAL059W_NCYC1407 | rna-NM_001178201.2_NCYC1407 | cds-NP_009342.2_NCYC1407 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:23221-23859:+ | gene-YAL059W_PE2H3 | rna-NM_001178201.2_PE2H3 | cds-NP_009342.2_PE2H3 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:22942-23580:+ | gene-YAL059W_PE2H4 | rna-NM_001178201.2_PE2H4 | cds-NP_009342.2_PE2H4 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:36509-37147:+ | gene-YAL059W_S288C | rna-NM_001178201.2_S288C | cds-NP_009342.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000084.1:11115-11753:+ | gene-YAL059W_SA1 | rna-NM_001178201.2_SA1 | cds-NP_009342.2_SA1 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:37222-37860:+ | gene-YAL059W_ThermosaccDry | rna-NM_001178201.2_ThermosaccDry | cds-NP_009342.2_ThermosaccDry | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:37977-38615:+ | gene-YAL059W_VR1 | rna-NM_001178201.2_VR1 | cds-NP_009342.2_VR1 | 99.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:9029-9667:+ | gene-YAL059W_ZTW1 | rna-NM_001178201.2_ZTW1 | cds-NP_009342.2_ZTW1 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:26720-27360:+ | gene-YAL059W_Sparadoxus | rna-NM_001178201.2_Sparadoxus | cds-NP_009342.2_Sparadoxus | 87.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |