EBS1 (YDR206W)


Gene profile

Gene name: EBS1
Reference locus (S288C): YDR206W
Gene biotype: protein_coding

Description: Protein involved in translation inhibition and nonsense-mediated decay; interacts with cap binding protein Cdc33p and with Nam7p; localizes to P-bodies upon glucose starvation; mRNA abundance regulated by mRNA decay factors; EBS1 has a paralog, EST1, that arose from the whole genome duplication

Top 10 interactors (score): NAM7 (0.992); EST2 (0.954); ECM32 (0.919); CBC2 (0.914); YDR274C (0.895); UPF3 (0.895); NMD2 (0.876); PAB1 (0.873); ESL1 (0.862); STO1 (0.854); XRN1 (0.835); ESL2 (0.821); SCD6 (0.787); DCP1 (0.746); CBF5 (0.737); TIF4632 (0.707); NMD4 (0.704); TOR1 (0.696); TIF4631 (0.694); TOR2 (0.685)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:830582-833236:+ gene-YDR206W_AKU4011 rna-NM_001180514.3_AKU4011 cds-NP_010492.3_AKU4011 99.3 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000080.1:292578-295232:- gene-YDR206W_BG1 rna-NM_001180514.3_BG1 cds-NP_010492.3_BG1 99.8 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:862995-865649:+ gene-YDR206W_Bruggeman rna-NM_001180514.3_Bruggeman cds-NP_010492.3_Bruggeman 99.3 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:850267-852921:+ gene-YDR206W_CAT1 rna-NM_001180514.3_CAT1 cds-NP_010492.3_CAT1 99.8 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:820942-823596:+ gene-YDR206W_CBS1585 rna-NM_001180514.3_CBS1585 cds-NP_010492.3_CBS1585 99.3 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005346.1:849951-852605:+ gene-YDR206W_CBS436 rna-NM_001180514.3_CBS436 cds-NP_010492.3_CBS436 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:817749-820403:+ gene-YDR206W_CBS6412 rna-NM_001180514.3_CBS6412 cds-NP_010492.3_CBS6412 99.3 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:848293-850947:+ gene-YDR206W_CBS6413 rna-NM_001180514.3_CBS6413 cds-NP_010492.3_CBS6413 99.3 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:860886-863540:+ gene-YDR206W_CENPK1137D rna-NM_001180514.3_CENPK1137D cds-NP_010492.3_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:831331-833985:+ gene-YDR206W_EthanolRed rna-NM_001180514.3_EthanolRed cds-NP_010492.3_EthanolRed 99.3 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:839543-842197:+ gene-YDR206W_FaliES1 rna-NM_001180514.3_FaliES1 cds-NP_010492.3_FaliES1 99.3 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000068.1:7149-9803:- gene-YDR206W_JAY291 rna-NM_001180514.3_JAY291 cds-NP_010492.3_JAY291 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:848648-851302:+ gene-YDR206W_MUCL30387 rna-NM_001180514.3_MUCL30387 cds-NP_010492.3_MUCL30387 99.3 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:836897-839551:+ gene-YDR206W_MUCL30388 rna-NM_001180514.3_MUCL30388 cds-NP_010492.3_MUCL30388 99.3 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:822389-825043:+ gene-YDR206W_MUCL39482 rna-NM_001180514.3_MUCL39482 cds-NP_010492.3_MUCL39482 99.3 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:761095-763749:+ gene-YDR206W_MUCL42920 rna-NM_001180514.3_MUCL42920 cds-NP_010492.3_MUCL42920 99.4 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:861977-864631:+ gene-YDR206W_NCIM3186 rna-NM_001180514.3_NCIM3186 cds-NP_010492.3_NCIM3186 99.2 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:825523-828177:+ gene-YDR206W_NCYC1407 rna-NM_001180514.3_NCYC1407 cds-NP_010492.3_NCYC1407 99.3 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:842280-844934:+ gene-YDR206W_PE2H3 rna-NM_001180514.3_PE2H3 cds-NP_010492.3_PE2H3 99.8 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:841579-844233:+ gene-YDR206W_PE2H4 rna-NM_001180514.3_PE2H4 cds-NP_010492.3_PE2H4 100.0 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:862054-864708:+ gene-YDR206W_S288C rna-NM_001180514.3_S288C cds-NP_010492.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000009.1:207758-210412:+ gene-YDR206W_SA1 rna-NM_001180514.3_SA1 cds-NP_010492.3_SA1 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:837698-840352:+ gene-YDR206W_ThermosaccDry rna-NM_001180514.3_ThermosaccDry cds-NP_010492.3_ThermosaccDry 99.3 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:852927-855581:+ gene-YDR206W_VR1 rna-NM_001180514.3_VR1 cds-NP_010492.3_VR1 99.8 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000007.1:100418-103072:+ gene-YDR206W_ZTW1 rna-NM_001180514.3_ZTW1 cds-NP_010492.3_ZTW1 99.3 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:842620-845289:+ gene-YDR206W_Sparadoxus rna-NM_001180514.3_Sparadoxus cds-NP_010492.3_Sparadoxus 86.3 99.9 Verified 1 1 1 False True False False False

Additional files