Gene name: EBP2
Reference locus (S288C): YKL172W
Gene biotype: protein_coding
Description: rRNA-processing protein EBP2; Required for 25S rRNA maturation and 60S ribosomal subunit assembly; localizes to the nucleolus and in foci along nuclear periphery; constituent of 66S pre-ribosomal particles; cooperates with Rrs1p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering
Top 10 interactors (score): LOC1 (0.999); NMD3 (0.999); NUG1 (0.999); SSF1 (0.999); MAK16 (0.999); NOC2 (0.999); BRX1 (0.999); CBF5 (0.999); DBP9 (0.999); UTP11 (0.999); DBP3 (0.999); PUF6 (0.999); RRP14 (0.999); MAK21 (0.999); CIC1 (0.999); NOP4 (0.999); NOG1 (0.999); RLP7 (0.999); RRP15 (0.999); DBP10 (0.999)
Homologues (species, bitscore): EBNA1BP2 (Homo sapiens, 118.2); Ebna1bp2 (Mus musculus, 120.6); ebna1bp2 (Danio rerio, 115.5); ebna1bp2 (Xenopus tropicalis, 117.5); CG1542 (Drosophila melanogaster, 87.4); C18A3.3 (Caenorhabditis elegans, 94.0); AT3G22660 (Arabidopsis thaliana, 98.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:112614-113903:+ | gene-YKL172W_AKU4011 | rna-NM_001179738.1_AKU4011 | cds-NP_012749.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:89172-90452:+ | gene-YKL172W_BG1 | rna-NM_001179738.1_BG1 | cds-NP_012749.1_BG1 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:130004-131305:+ | gene-YKL172W_Bruggeman | rna-NM_001179738.1_Bruggeman | cds-NP_012749.1_Bruggeman | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:124967-126247:+ | gene-YKL172W_CAT1 | rna-NM_001179738.1_CAT1 | cds-NP_012749.1_CAT1 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:124598-125887:+ | gene-YKL172W_CBS1585 | rna-NM_001179738.1_CBS1585 | cds-NP_012749.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:123363-124643:+ | gene-YKL172W_CBS436 | rna-NM_001179738.1_CBS436 | cds-NP_012749.1_CBS436 | 99.4 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:110188-111477:+ | gene-YKL172W_CBS6412 | rna-NM_001179738.1_CBS6412 | cds-NP_012749.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:125314-126603:+ | gene-YKL172W_CBS6413 | rna-NM_001179738.1_CBS6413 | cds-NP_012749.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:125585-126868:+ | gene-YKL172W_CENPK1137D | rna-NM_001179738.1_CENPK1137D | cds-NP_012749.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:123500-124807:+ | gene-YKL172W_EthanolRed | rna-NM_001179738.1_EthanolRed | cds-NP_012749.1_EthanolRed | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:124201-125508:+ | gene-YKL172W_FaliES1 | rna-NM_001179738.1_FaliES1 | cds-NP_012749.1_FaliES1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:123185-124466:+ | gene-YKL172W_JAY291 | rna-NM_001179738.1_JAY291 | cds-NP_012749.1_JAY291 | 99.3 | 99.7 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:132304-133593:+ | gene-YKL172W_MUCL30387 | rna-NM_001179738.1_MUCL30387 | cds-NP_012749.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:126648-127949:+ | gene-YKL172W_MUCL30388 | rna-NM_001179738.1_MUCL30388 | cds-NP_012749.1_MUCL30388 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:124653-125942:+ | gene-YKL172W_MUCL39482 | rna-NM_001179738.1_MUCL39482 | cds-NP_012749.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:128988-130268:+ | gene-YKL172W_MUCL42920 | rna-NM_001179738.1_MUCL42920 | cds-NP_012749.1_MUCL42920 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:125748-127031:+ | gene-YKL172W_NCIM3186 | rna-NM_001179738.1_NCIM3186 | cds-NP_012749.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:124677-125966:+ | gene-YKL172W_NCYC1407 | rna-NM_001179738.1_NCYC1407 | cds-NP_012749.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:131738-133018:+ | gene-YKL172W_PE2H3 | rna-NM_001179738.1_PE2H3 | cds-NP_012749.1_PE2H3 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:128032-129312:+ | gene-YKL172W_PE2H4 | rna-NM_001179738.1_PE2H4 | cds-NP_012749.1_PE2H4 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:125759-127042:+ | gene-YKL172W_S288C | rna-NM_001179738.1_S288C | cds-NP_012749.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:41965-43242:+ | gene-YKL172W_SA1 | rna-NM_001179738.1_SA1 | cds-NP_012749.1_SA1 | 99.2 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:124901-126208:+ | gene-YKL172W_ThermosaccDry | rna-NM_001179738.1_ThermosaccDry | cds-NP_012749.1_ThermosaccDry | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:123443-124723:+ | gene-YKL172W_VR1 | rna-NM_001179738.1_VR1 | cds-NP_012749.1_VR1 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:123312-124598:+ | gene-YKL172W_ZTW1 | rna-NM_001179738.1_ZTW1 | cds-NP_012749.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:137842-139119:+ | gene-YKL172W_Sparadoxus | rna-NM_001179738.1_Sparadoxus | cds-NP_012749.1_Sparadoxus | 88.0 | 98.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |