Gene name: EAR1
Reference locus (S288C): YMR171C
Gene biotype: protein_coding
Description: Protein EAR1; Specificity factor required for Rsp5p-dependent ubiquitination; also required for sorting of specific cargo proteins at the multivesicular body; mRNA is targeted to the bud via the mRNA transport system involving She2p
Top 10 interactors (score): RSP5 (0.928); GID7 (0.841); TRE1 (0.754); WSC2 (0.696); RMD5 (0.693); MAM3 (0.671); SHE2 (0.671); TUL1 (0.665); BSD2 (0.655); PEP12 (0.651); ALY2 (0.65); SNA3 (0.65); UBX3 (0.648); FYV10 (0.648); ZRT3 (0.647); IST2 (0.618); ART10 (0.615); BUL1 (0.614); PEP8 (0.607); TRA1 (0.598)
Homologues (species, bitscore): RANBP10 (Homo sapiens, 58.9); Ranbp10 (Mus musculus, 59.3); ranbp9 (Danio rerio, 58.2); ranbp9 (Xenopus tropicalis, 56.6); RanBPM (Drosophila melanogaster, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:643616-645268:- | gene-YMR171C_AKU4011 | rna-NM_001182675.1_AKU4011 | cds-NP_013894.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:27560-29212:+ | gene-YMR171C_BG1 | rna-NM_001182675.1_BG1 | cds-NP_013894.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:586545-588197:- | gene-YMR171C_Bruggeman | rna-NM_001182675.1_Bruggeman | cds-NP_013894.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:590048-591700:- | gene-YMR171C_CAT1 | rna-NM_001182675.1_CAT1 | cds-NP_013894.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:576297-577949:- | gene-YMR171C_CBS1585 | rna-NM_001182675.1_CBS1585 | cds-NP_013894.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:580163-581815:- | gene-YMR171C_CBS436 | rna-NM_001182675.1_CBS436 | cds-NP_013894.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:688502-690154:- | gene-YMR171C_CBS6412 | rna-NM_001182675.1_CBS6412 | cds-NP_013894.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:574847-576499:- | gene-YMR171C_CBS6413 | rna-NM_001182675.1_CBS6413 | cds-NP_013894.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:598771-600423:- | gene-YMR171C_CENPK1137D | rna-NM_001182675.1_CENPK1137D | cds-NP_013894.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:636473-638125:- | gene-YMR171C_EthanolRed | rna-NM_001182675.1_EthanolRed | cds-NP_013894.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:581627-583279:- | gene-YMR171C_FaliES1 | rna-NM_001182675.1_FaliES1 | cds-NP_013894.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000201.1:3998-5650:+ | gene-YMR171C_JAY291 | rna-NM_001182675.1_JAY291 | cds-NP_013894.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:581518-583170:- | gene-YMR171C_MUCL30387 | rna-NM_001182675.1_MUCL30387 | cds-NP_013894.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:587170-588822:- | gene-YMR171C_MUCL30388 | rna-NM_001182675.1_MUCL30388 | cds-NP_013894.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:576983-578635:- | gene-YMR171C_MUCL39482 | rna-NM_001182675.1_MUCL39482 | cds-NP_013894.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:584527-586179:- | gene-YMR171C_MUCL42920 | rna-NM_001182675.1_MUCL42920 | cds-NP_013894.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:603822-605474:- | gene-YMR171C_NCIM3186 | rna-NM_001182675.1_NCIM3186 | cds-NP_013894.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:576685-578337:- | gene-YMR171C_NCYC1407 | rna-NM_001182675.1_NCYC1407 | cds-NP_013894.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:587028-588680:- | gene-YMR171C_PE2H3 | rna-NM_001182675.1_PE2H3 | cds-NP_013894.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:587490-589142:- | gene-YMR171C_PE2H4 | rna-NM_001182675.1_PE2H4 | cds-NP_013894.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:603868-605520:- | gene-YMR171C_S288C | rna-NM_001182675.1_S288C | cds-NP_013894.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:202950-204602:+ | gene-YMR171C_SA1 | rna-NM_001182675.1_SA1 | cds-NP_013894.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:577359-579011:- | gene-YMR171C_ThermosaccDry | rna-NM_001182675.1_ThermosaccDry | cds-NP_013894.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:590853-592505:- | gene-YMR171C_VR1 | rna-NM_001182675.1_VR1 | cds-NP_013894.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:551983-553635:- | gene-YMR171C_ZTW1 | rna-NM_001182675.1_ZTW1 | cds-NP_013894.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:595643-597295:- | gene-YMR171C_Sparadoxus | rna-NM_001182675.1_Sparadoxus | cds-NP_013894.1_Sparadoxus | 90.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |