Gene name: DXO1
Reference locus (S288C): YDR370C
Gene biotype: protein_coding
Description: Decapping and exoribonuclease protein 1; mRNA 5'-end-capping quality-control protein; has distributive, 5'-3' exoRNase activity; similar to Rai1p;; Belongs to the DXO/Dom3Z family
Top 10 interactors (score): RAT1 (0.922); XRN1 (0.76); DCS1 (0.746); DCP2 (0.745); ABD1 (0.712); CBC2 (0.711); STO1 (0.597); CDC33 (0.568); APA2 (0.557); RAI1 (0.523); SDT1 (0.52); RTT103 (0.497)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1157925-1159253:- | gene-YDR370C_AKU4011 | rna-NM_001180678.3_AKU4011 | cds-NP_010658.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:36474-37802:- | gene-YDR370C_BG1 | rna-NM_001180678.3_BG1 | cds-NP_010658.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1188575-1189885:- | gene-YDR370C_Bruggeman | rna-NM_001180678.3_Bruggeman | cds-NP_010658.3_Bruggeman | 98.4 | 98.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1167168-1168496:- | gene-YDR370C_CAT1 | rna-NM_001180678.3_CAT1 | cds-NP_010658.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1152642-1153970:- | gene-YDR370C_CBS1585 | rna-NM_001180678.3_CBS1585 | cds-NP_010658.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1171225-1172553:- | gene-YDR370C_CBS436 | rna-NM_001180678.3_CBS436 | cds-NP_010658.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1148902-1150230:- | gene-YDR370C_CBS6412 | rna-NM_001180678.3_CBS6412 | cds-NP_010658.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1170792-1172120:- | gene-YDR370C_CBS6413 | rna-NM_001180678.3_CBS6413 | cds-NP_010658.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1216434-1217762:- | gene-YDR370C_CENPK1137D | rna-NM_001180678.3_CENPK1137D | cds-NP_010658.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1162326-1163654:- | gene-YDR370C_EthanolRed | rna-NM_001180678.3_EthanolRed | cds-NP_010658.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1165609-1166937:- | gene-YDR370C_FaliES1 | rna-NM_001180678.3_FaliES1 | cds-NP_010658.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000057.1:24138-25466:+ | gene-YDR370C_JAY291 | rna-NM_001180678.3_JAY291 | cds-NP_010658.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1171875-1173203:- | gene-YDR370C_MUCL30387 | rna-NM_001180678.3_MUCL30387 | cds-NP_010658.3_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1154479-1155807:- | gene-YDR370C_MUCL30388 | rna-NM_001180678.3_MUCL30388 | cds-NP_010658.3_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1144176-1145504:- | gene-YDR370C_MUCL39482 | rna-NM_001180678.3_MUCL39482 | cds-NP_010658.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1086607-1087935:- | gene-YDR370C_MUCL42920 | rna-NM_001180678.3_MUCL42920 | cds-NP_010658.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1217705-1219033:- | gene-YDR370C_NCIM3186 | rna-NM_001180678.3_NCIM3186 | cds-NP_010658.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1157847-1159175:- | gene-YDR370C_NCYC1407 | rna-NM_001180678.3_NCYC1407 | cds-NP_010658.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1168274-1169602:- | gene-YDR370C_PE2H3 | rna-NM_001180678.3_PE2H3 | cds-NP_010658.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1173859-1175187:- | gene-YDR370C_PE2H4 | rna-NM_001180678.3_PE2H4 | cds-NP_010658.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1217782-1219110:- | gene-YDR370C_S288C | rna-NM_001180678.3_S288C | cds-NP_010658.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000072.1:36555-37883:- | gene-YDR370C_SA1 | rna-NM_001180678.3_SA1 | cds-NP_010658.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1169890-1171218:- | gene-YDR370C_ThermosaccDry | rna-NM_001180678.3_ThermosaccDry | cds-NP_010658.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:597238-598566:- | gene-YDR370C_VR1 | rna-NM_001180678.3_VR1 | cds-NP_010658.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:212724-214052:- | gene-YDR370C_ZTW1 | rna-NM_001180678.3_ZTW1 | cds-NP_010658.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1164400-1165722:- | gene-YDR370C_Sparadoxus | rna-NM_001180678.3_Sparadoxus | cds-NP_010658.3_Sparadoxus | 87.7 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |