Gene name: DUS4
Reference locus (S288C): YLR405W
Gene biotype: protein_coding
Description: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]; Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p; Belongs to the Dus family. Dus4 subfamily
Top 10 interactors (score): TRM10 (0.94); TRM1 (0.893); GCD14 (0.891); TRM5 (0.876); NCL1 (0.861); YET3 (0.853); TRM7 (0.83); GCD10 (0.809); DEG1 (0.802); TRM11 (0.795); TRM8 (0.709); RFS1 (0.692); TRM112 (0.676); DRE2 (0.673); LOT6 (0.622); TRM732 (0.617); ATG4 (0.605); PUS1 (0.604); DUS1 (0.591); TAD3 (0.579)
Homologues (species, bitscore): DUS4L (Homo sapiens, 230.7); Dus4l (Mus musculus, 233.4); dus4l (Danio rerio, 228.4); dus4l (Xenopus tropicalis, 225.7); CG10495 (Drosophila melanogaster, 176.0); C45G9.2 (Caenorhabditis elegans, 189.9); AT5G67220 (Arabidopsis thaliana, 161.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:879324-880427:+ | gene-YLR405W_AKU4011 | rna-NM_001182293.1_AKU4011 | cds-NP_013509.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:111467-112570:+ | gene-YLR405W_BG1 | rna-NM_001182293.1_BG1 | cds-NP_013509.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:917629-918732:+ | gene-YLR405W_Bruggeman | rna-NM_001182293.1_Bruggeman | cds-NP_013509.1_Bruggeman | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:913153-914256:+ | gene-YLR405W_CAT1 | rna-NM_001182293.1_CAT1 | cds-NP_013509.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:914919-916022:+ | gene-YLR405W_CBS1585 | rna-NM_001182293.1_CBS1585 | cds-NP_013509.1_CBS1585 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:898558-899661:+ | gene-YLR405W_CBS436 | rna-NM_001182293.1_CBS436 | cds-NP_013509.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:950961-952064:+ | gene-YLR405W_CBS6412 | rna-NM_001182293.1_CBS6412 | cds-NP_013509.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:915211-916314:+ | gene-YLR405W_CBS6413 | rna-NM_001182293.1_CBS6413 | cds-NP_013509.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:914600-915703:+ | gene-YLR405W_CENPK1137D | rna-NM_001182293.1_CENPK1137D | cds-NP_013509.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:871866-872969:+ | gene-YLR405W_EthanolRed | rna-NM_001182293.1_EthanolRed | cds-NP_013509.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:901176-902279:+ | gene-YLR405W_FaliES1 | rna-NM_001182293.1_FaliES1 | cds-NP_013509.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:54336-55439:+ | gene-YLR405W_JAY291 | rna-NM_001182293.1_JAY291 | cds-NP_013509.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:916495-917598:+ | gene-YLR405W_MUCL30387 | rna-NM_001182293.1_MUCL30387 | cds-NP_013509.1_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:922593-923696:+ | gene-YLR405W_MUCL30388 | rna-NM_001182293.1_MUCL30388 | cds-NP_013509.1_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:916139-917242:+ | gene-YLR405W_MUCL39482 | rna-NM_001182293.1_MUCL39482 | cds-NP_013509.1_MUCL39482 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:910795-911898:+ | gene-YLR405W_MUCL42920 | rna-NM_001182293.1_MUCL42920 | cds-NP_013509.1_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:929763-930866:+ | gene-YLR405W_NCIM3186 | rna-NM_001182293.1_NCIM3186 | cds-NP_013509.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:925320-926423:+ | gene-YLR405W_NCYC1407 | rna-NM_001182293.1_NCYC1407 | cds-NP_013509.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:911717-912820:+ | gene-YLR405W_PE2H3 | rna-NM_001182293.1_PE2H3 | cds-NP_013509.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:911461-912564:+ | gene-YLR405W_PE2H4 | rna-NM_001182293.1_PE2H4 | cds-NP_013509.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:929789-930892:+ | gene-YLR405W_S288C | rna-NM_001182293.1_S288C | cds-NP_013509.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:117796-118899:- | gene-YLR405W_SA1 | rna-NM_001182293.1_SA1 | cds-NP_013509.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:904255-905358:+ | gene-YLR405W_ThermosaccDry | rna-NM_001182293.1_ThermosaccDry | cds-NP_013509.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:916807-917910:+ | gene-YLR405W_VR1 | rna-NM_001182293.1_VR1 | cds-NP_013509.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:240973-242076:+ | gene-YLR405W_ZTW1 | rna-NM_001182293.1_ZTW1 | cds-NP_013509.1_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:889818-890921:+ | gene-YLR405W_Sparadoxus | rna-NM_001182293.1_Sparadoxus | cds-NP_013509.1_Sparadoxus | 89.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |