Gene name: DSS1
Reference locus (S288C): YMR287C
Gene biotype: protein_coding
Description: 3'-5' exoribonuclease; component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs
Top 10 interactors (score): SUV3 (0.999); CSL4 (0.979); RRP4 (0.975); RRP40 (0.972); RRP6 (0.971); RRP46 (0.966); RRP42 (0.963); RRP45 (0.94); RRP43 (0.939); SKI6 (0.937); MTR3 (0.937); DIS3 (0.928); MTR4 (0.911); SKI2 (0.866); RPM2 (0.82); BI2 (0.813); PUF3 (0.785); PET127 (0.771); YME2 (0.75); XRN1 (0.659)
Homologues (species, bitscore): DIS3L2 (Homo sapiens, 65.9); Dis3l2 (Mus musculus, 65.9); LOC566106 (Danio rerio, 71.2); dis3l2 (Xenopus tropicalis, 65.9); CG16940 (Drosophila melanogaster, 67.4); dis-3 (Caenorhabditis elegans, 75.5); EMB2730 (Arabidopsis thaliana, 98.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:881489-884398:- | gene-YMR287C_AKU4011 | rna-NM_001182794.1_AKU4011 | cds-NP_014014.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:69276-72185:+ | gene-YMR287C_BG1 | rna-NM_001182794.1_BG1 | cds-NP_014014.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:826697-829606:- | gene-YMR287C_Bruggeman | rna-NM_001182794.1_Bruggeman | cds-NP_014014.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:829983-832892:- | gene-YMR287C_CAT1 | rna-NM_001182794.1_CAT1 | cds-NP_014014.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:813739-816648:- | gene-YMR287C_CBS1585 | rna-NM_001182794.1_CBS1585 | cds-NP_014014.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:836053-838962:- | gene-YMR287C_CBS436 | rna-NM_001182794.1_CBS436 | cds-NP_014014.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:925313-928222:- | gene-YMR287C_CBS6412 | rna-NM_001182794.1_CBS6412 | cds-NP_014014.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:812860-815769:- | gene-YMR287C_CBS6413 | rna-NM_001182794.1_CBS6413 | cds-NP_014014.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:836982-839891:- | gene-YMR287C_CENPK1137D | rna-NM_001182794.1_CENPK1137D | cds-NP_014014.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:874179-877088:- | gene-YMR287C_EthanolRed | rna-NM_001182794.1_EthanolRed | cds-NP_014014.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:820206-823115:- | gene-YMR287C_FaliES1 | rna-NM_001182794.1_FaliES1 | cds-NP_014014.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:28619-31528:+ | gene-YMR287C_JAY291 | rna-NM_001182794.1_JAY291 | cds-NP_014014.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:820522-823431:- | gene-YMR287C_MUCL30387 | rna-NM_001182794.1_MUCL30387 | cds-NP_014014.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:829919-832828:- | gene-YMR287C_MUCL30388 | rna-NM_001182794.1_MUCL30388 | cds-NP_014014.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:814827-817736:- | gene-YMR287C_MUCL39482 | rna-NM_001182794.1_MUCL39482 | cds-NP_014014.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:823631-826540:- | gene-YMR287C_MUCL42920 | rna-NM_001182794.1_MUCL42920 | cds-NP_014014.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:842390-845299:- | gene-YMR287C_NCIM3186 | rna-NM_001182794.1_NCIM3186 | cds-NP_014014.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:814470-817379:- | gene-YMR287C_NCYC1407 | rna-NM_001182794.1_NCYC1407 | cds-NP_014014.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:830274-833183:- | gene-YMR287C_PE2H3 | rna-NM_001182794.1_PE2H3 | cds-NP_014014.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:826248-829157:- | gene-YMR287C_PE2H4 | rna-NM_001182794.1_PE2H4 | cds-NP_014014.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:842436-845345:- | gene-YMR287C_S288C | rna-NM_001182794.1_S288C | cds-NP_014014.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:20204-23113:- | gene-YMR287C_SA1 | rna-NM_001182794.1_SA1 | cds-NP_014014.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:816375-819284:- | gene-YMR287C_ThermosaccDry | rna-NM_001182794.1_ThermosaccDry | cds-NP_014014.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:830119-833028:- | gene-YMR287C_VR1 | rna-NM_001182794.1_VR1 | cds-NP_014014.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:231609-234518:- | gene-YMR287C_ZTW1 | rna-NM_001182794.1_ZTW1 | cds-NP_014014.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:834987-837896:- | gene-YMR287C_Sparadoxus | rna-NM_001182794.1_Sparadoxus | cds-NP_014014.1_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |