Gene name: DIP2
Reference locus (S288C): YLR129W
Gene biotype: protein_coding
Description: U3 small nucleolar RNA-associated protein 12; Nucleolar protein; specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex
Top 10 interactors (score): RRP12 (0.999); UTP25 (0.999); NOP58 (0.999); RCL1 (0.999); UTP13 (0.999); YTM1 (0.999); UTP8 (0.999); IMP3 (0.999); PNO1 (0.999); UTP5 (0.999); RRP9 (0.999); UTP15 (0.999); NAN1 (0.999); NOP56 (0.999); MRD1 (0.999); MTR4 (0.999); ERB1 (0.999); PWP2 (0.999); ENP2 (0.999); UTP30 (0.999)
Homologues (species, bitscore): WDR3 (Homo sapiens, 607.4); Wdr3 (Mus musculus, 604.0); wdr3 (Danio rerio, 641.0); wdr3 (Xenopus tropicalis, 605.5); CG8064 (Drosophila melanogaster, 486.1); F13H8.2 (Caenorhabditis elegans, 380.6); AT3G21540 (Arabidopsis thaliana, 570.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:382138-384969:+ | gene-YLR129W_AKU4011 | rna-NM_001182016.1_AKU4011 | cds-NP_013230.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:345922-348753:+ | gene-YLR129W_BG1 | rna-NM_001182016.1_BG1 | cds-NP_013230.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:394017-396848:+ | gene-YLR129W_Bruggeman | rna-NM_001182016.1_Bruggeman | cds-NP_013230.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:393432-396263:+ | gene-YLR129W_CAT1 | rna-NM_001182016.1_CAT1 | cds-NP_013230.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:389282-392113:+ | gene-YLR129W_CBS1585 | rna-NM_001182016.1_CBS1585 | cds-NP_013230.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:379522-382353:+ | gene-YLR129W_CBS436 | rna-NM_001182016.1_CBS436 | cds-NP_013230.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:387699-390530:+ | gene-YLR129W_CBS6412 | rna-NM_001182016.1_CBS6412 | cds-NP_013230.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:389547-392378:+ | gene-YLR129W_CBS6413 | rna-NM_001182016.1_CBS6413 | cds-NP_013230.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:384679-387510:+ | gene-YLR129W_CENPK1137D | rna-NM_001182016.1_CENPK1137D | cds-NP_013230.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:382339-385170:+ | gene-YLR129W_EthanolRed | rna-NM_001182016.1_EthanolRed | cds-NP_013230.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:381850-384681:+ | gene-YLR129W_FaliES1 | rna-NM_001182016.1_FaliES1 | cds-NP_013230.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000117.1:8509-11339:- | gene-YLR129W_JAY291 | rna-NM_001182016.1_JAY291 | cds-NP_013230.1_JAY291 | 99.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:394008-396839:+ | gene-YLR129W_MUCL30387 | rna-NM_001182016.1_MUCL30387 | cds-NP_013230.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:398827-401658:+ | gene-YLR129W_MUCL30388 | rna-NM_001182016.1_MUCL30388 | cds-NP_013230.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:389791-392622:+ | gene-YLR129W_MUCL39482 | rna-NM_001182016.1_MUCL39482 | cds-NP_013230.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:389916-392747:+ | gene-YLR129W_MUCL42920 | rna-NM_001182016.1_MUCL42920 | cds-NP_013230.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:399631-402462:+ | gene-YLR129W_NCIM3186 | rna-NM_001182016.1_NCIM3186 | cds-NP_013230.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:382063-384894:+ | gene-YLR129W_NCYC1407 | rna-NM_001182016.1_NCYC1407 | cds-NP_013230.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:387632-390463:+ | gene-YLR129W_PE2H3 | rna-NM_001182016.1_PE2H3 | cds-NP_013230.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:387373-390204:+ | gene-YLR129W_PE2H4 | rna-NM_001182016.1_PE2H4 | cds-NP_013230.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:399657-402488:+ | gene-YLR129W_S288C | rna-NM_001182016.1_S288C | cds-NP_013230.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:25570-28401:+ | gene-YLR129W_SA1 | rna-NM_001182016.1_SA1 | cds-NP_013230.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:383060-385891:+ | gene-YLR129W_ThermosaccDry | rna-NM_001182016.1_ThermosaccDry | cds-NP_013230.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:395774-398605:+ | gene-YLR129W_VR1 | rna-NM_001182016.1_VR1 | cds-NP_013230.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:380857-383688:+ | gene-YLR129W_ZTW1 | rna-NM_001182016.1_ZTW1 | cds-NP_013230.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:390947-393778:+ | gene-YLR129W_Sparadoxus | rna-NM_001182016.1_Sparadoxus | cds-NP_013230.1_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |