Gene name: DIB1
Reference locus (S288C): YPR082C
Gene biotype: protein_coding
Description: Spliceosomal protein DIB1; 17-kDa component of the U4/U6aU5 tri-snRNP; plays an essential role in pre-mRNA splicing; human ortholog TXNL4A (the human U5-specific 15-kDa protein) complements yeast dib1 null mutant; Belongs to the DIM1 family
Top 10 interactors (score): PRP6 (0.999); LSM7 (0.999); PRP31 (0.999); PRP28 (0.999); SNU66 (0.999); SMD3 (0.999); LSM3 (0.999); PRP3 (0.999); SMB1 (0.999); SNU13 (0.999); SNU23 (0.999); SMX3 (0.999); SMX2 (0.999); SNU114 (0.999); LIN1 (0.999); BRR2 (0.999); PRP8 (0.999); LSM6 (0.998); PRP4 (0.998); LSM5 (0.998)
Homologues (species, bitscore): TXNL4A (Homo sapiens, 196.4); Txnl4a (Mus musculus, 196.4); txnl4a (Danio rerio, 196.4); txnl4a (Xenopus tropicalis, 195.7); Dim1 (Drosophila melanogaster, 195.7); Y54G2A.75 (Caenorhabditis elegans, 184.5); YLS8 (Arabidopsis thaliana, 194.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:675907-676338:- | gene-YPR082C_AKU4011 | rna-NM_001184179.1_AKU4011 | cds-NP_015407.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:221342-221773:+ | gene-YPR082C_BG1 | rna-NM_001184179.1_BG1 | cds-NP_015407.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:753586-754017:- | gene-YPR082C_Bruggeman | rna-NM_001184179.1_Bruggeman | cds-NP_015407.1_Bruggeman | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:797887-798318:- | gene-YPR082C_CAT1 | rna-NM_001184179.1_CAT1 | cds-NP_015407.1_CAT1 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:679833-680264:- | gene-YPR082C_CBS1585 | rna-NM_001184179.1_CBS1585 | cds-NP_015407.1_CBS1585 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:694458-694889:- | gene-YPR082C_CBS436 | rna-NM_001184179.1_CBS436 | cds-NP_015407.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:682969-683400:- | gene-YPR082C_CBS6412 | rna-NM_001184179.1_CBS6412 | cds-NP_015407.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:676790-677221:- | gene-YPR082C_CBS6413 | rna-NM_001184179.1_CBS6413 | cds-NP_015407.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:704204-704635:- | gene-YPR082C_CENPK1137D | rna-NM_001184179.1_CENPK1137D | cds-NP_015407.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1002907-1003338:- | gene-YPR082C_EthanolRed | rna-NM_001184179.1_EthanolRed | cds-NP_015407.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:681740-682171:- | gene-YPR082C_FaliES1 | rna-NM_001184179.1_FaliES1 | cds-NP_015407.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000094.1:3632-4063:- | gene-YPR082C_JAY291 | rna-NM_001184179.1_JAY291 | cds-NP_015407.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:694845-695276:- | gene-YPR082C_MUCL30387 | rna-NM_001184179.1_MUCL30387 | cds-NP_015407.1_MUCL30387 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:693549-693980:- | gene-YPR082C_MUCL30388 | rna-NM_001184179.1_MUCL30388 | cds-NP_015407.1_MUCL30388 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:672840-673271:- | gene-YPR082C_MUCL39482 | rna-NM_001184179.1_MUCL39482 | cds-NP_015407.1_MUCL39482 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:735686-736117:- | gene-YPR082C_MUCL42920 | rna-NM_001184179.1_MUCL42920 | cds-NP_015407.1_MUCL42920 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:704208-704639:- | gene-YPR082C_NCIM3186 | rna-NM_001184179.1_NCIM3186 | cds-NP_015407.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:681266-681697:- | gene-YPR082C_NCYC1407 | rna-NM_001184179.1_NCYC1407 | cds-NP_015407.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:687668-688099:- | gene-YPR082C_PE2H3 | rna-NM_001184179.1_PE2H3 | cds-NP_015407.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:687316-687747:- | gene-YPR082C_PE2H4 | rna-NM_001184179.1_PE2H4 | cds-NP_015407.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:704225-704656:- | gene-YPR082C_S288C | rna-NM_001184179.1_S288C | cds-NP_015407.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:2345-2776:- | gene-YPR082C_SA1 | rna-NM_001184179.1_SA1 | cds-NP_015407.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:681515-681946:- | gene-YPR082C_ThermosaccDry | rna-NM_001184179.1_ThermosaccDry | cds-NP_015407.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:698156-698587:- | gene-YPR082C_VR1 | rna-NM_001184179.1_VR1 | cds-NP_015407.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:680734-681165:- | gene-YPR082C_ZTW1 | rna-NM_001184179.1_ZTW1 | cds-NP_015407.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:681430-681861:- | gene-YPR082C_Sparadoxus | rna-NM_001184179.1_Sparadoxus | cds-NP_015407.1_Sparadoxus | 95.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |