Gene name: DEP1
Reference locus (S288C): YAL013W
Gene biotype: protein_coding
Description: Transcriptional regulatory protein DEP1; Component of the Rpd3L histone deacetylase complex; required for diauxic shift-induced histone H2B deposition onto rDNA genes; transcriptional modulator involved in regulation of structural phospholipid biosynthesis genes and metabolically unrelated genes, as well as maintenance of telomeres, mating efficiency, and sporulation
Top 10 interactors (score): RPD3 (0.997); SAP30 (0.996); SDS3 (0.995); RXT2 (0.993); UME1 (0.99); CTI6 (0.987); SIN3 (0.985); PHO23 (0.98); RXT3 (0.979); ASH1 (0.978); RCO1 (0.97); UME6 (0.963); EAF3 (0.942); SNT1 (0.939); SET3 (0.937); HOS2 (0.921); SIF2 (0.919); TOD6 (0.904); HHT2 (0.904); HTB1 (0.903)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:114382-115599:+ | gene-YAL013W_AKU4011 | rna-NM_001178158.2_AKU4011 | cds-NP_009389.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:101332-102549:+ | gene-YAL013W_BG1 | rna-NM_001178158.2_BG1 | cds-NP_009389.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:129255-130472:+ | gene-YAL013W_Bruggeman | rna-NM_001178158.2_Bruggeman | cds-NP_009389.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:115591-116808:+ | gene-YAL013W_CAT1 | rna-NM_001178158.2_CAT1 | cds-NP_009389.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:127394-128611:+ | gene-YAL013W_CBS1585 | rna-NM_001178158.2_CBS1585 | cds-NP_009389.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:127672-128889:+ | gene-YAL013W_CBS436 | rna-NM_001178158.2_CBS436 | cds-NP_009389.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:740488-741705:+ | gene-YAL013W_CBS6412 | rna-NM_001178158.2_CBS6412 | cds-NP_009389.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:125664-126881:+ | gene-YAL013W_CBS6413 | rna-NM_001178158.2_CBS6413 | cds-NP_009389.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:129430-130647:+ | gene-YAL013W_CENPK1137D | rna-NM_001178158.2_CENPK1137D | cds-NP_009389.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:115801-117018:+ | gene-YAL013W_EthanolRed | rna-NM_001178158.2_EthanolRed | cds-NP_009389.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:130428-131645:+ | gene-YAL013W_FaliES1 | rna-NM_001178158.2_FaliES1 | cds-NP_009389.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:101700-102917:+ | gene-YAL013W_JAY291 | rna-NM_001178158.2_JAY291 | cds-NP_009389.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:130408-131625:+ | gene-YAL013W_MUCL30387 | rna-NM_001178158.2_MUCL30387 | cds-NP_009389.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:127655-128872:+ | gene-YAL013W_MUCL30388 | rna-NM_001178158.2_MUCL30388 | cds-NP_009389.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:126176-127393:+ | gene-YAL013W_MUCL39482 | rna-NM_001178158.2_MUCL39482 | cds-NP_009389.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:128557-129774:+ | gene-YAL013W_MUCL42920 | rna-NM_001178158.2_MUCL42920 | cds-NP_009389.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:129147-130364:+ | gene-YAL013W_NCIM3186 | rna-NM_001178158.2_NCIM3186 | cds-NP_009389.3_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:114059-115276:+ | gene-YAL013W_NCYC1407 | rna-NM_001178158.2_NCYC1407 | cds-NP_009389.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:115988-117205:+ | gene-YAL013W_PE2H3 | rna-NM_001178158.2_PE2H3 | cds-NP_009389.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:115707-116924:+ | gene-YAL013W_PE2H4 | rna-NM_001178158.2_PE2H4 | cds-NP_009389.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:129270-130487:+ | gene-YAL013W_S288C | rna-NM_001178158.2_S288C | cds-NP_009389.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:46192-47409:+ | gene-YAL013W_SA1 | rna-NM_001178158.2_SA1 | cds-NP_009389.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:129920-131137:+ | gene-YAL013W_ThermosaccDry | rna-NM_001178158.2_ThermosaccDry | cds-NP_009389.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:131230-132447:+ | gene-YAL013W_VR1 | rna-NM_001178158.2_VR1 | cds-NP_009389.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:101748-102965:+ | gene-YAL013W_ZTW1 | rna-NM_001178158.2_ZTW1 | cds-NP_009389.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:119224-120441:+ | gene-YAL013W_Sparadoxus | rna-NM_001178158.2_Sparadoxus | cds-NP_009389.3_Sparadoxus | 92.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |