Gene name: DEG1
Reference locus (S288C): YFL001W
Gene biotype: protein_coding
Description: tRNA:pseudouridine synthase; introduces pseudouridines at position 38 or 39 in tRNA; also responsible for pseudouracil modification of some mRNAs; important for maintenance of translation efficiency and normal cell growth, localizes to both the nucleus and cytoplasm; non-essential for viability
Top 10 interactors (score): PUS7 (0.976); PUS4 (0.975); TRM1 (0.969); PUS2 (0.964); TRM7 (0.964); TRM10 (0.952); SSM4 (0.915); NCL1 (0.905); TRM5 (0.902); PUS6 (0.898); SEC62 (0.896); RIB2 (0.891); URM1 (0.889); PUS9 (0.889); PUS5 (0.879); ELP3 (0.878); SUA5 (0.871); TRM82 (0.864); MOD5 (0.849); MATALPHA2 (0.843)
Homologues (species, bitscore): PUS3 (Homo sapiens, 264.2); Pus3 (Mus musculus, 266.9); pus3 (Danio rerio, 250.4); pus3 (Xenopus tropicalis, 251.9); CG3045 (Drosophila melanogaster, 218.4); tag-124 (Caenorhabditis elegans, 202.2); AT1G34150 (Arabidopsis thaliana, 207.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:137577-138905:+ | gene-YFL001W_AKU4011 | rna-NM_001179965.1_AKU4011 | cds-NP_116655.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000079.1:22472-23800:+ | gene-YFL001W_BG1 | rna-NM_001179965.1_BG1 | cds-NP_116655.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:137143-138471:+ | gene-YFL001W_Bruggeman | rna-NM_001179965.1_Bruggeman | cds-NP_116655.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:142306-143634:+ | gene-YFL001W_CAT1 | rna-NM_001179965.1_CAT1 | cds-NP_116655.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:138402-139730:+ | gene-YFL001W_CBS1585 | rna-NM_001179965.1_CBS1585 | cds-NP_116655.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:112249-113577:+ | gene-YFL001W_CBS436 | rna-NM_001179965.1_CBS436 | cds-NP_116655.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:138143-139471:+ | gene-YFL001W_CBS6412 | rna-NM_001179965.1_CBS6412 | cds-NP_116655.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:140653-141981:+ | gene-YFL001W_CBS6413 | rna-NM_001179965.1_CBS6413 | cds-NP_116655.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:143265-144593:+ | gene-YFL001W_CENPK1137D | rna-NM_001179965.1_CENPK1137D | cds-NP_116655.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:136563-137891:+ | gene-YFL001W_EthanolRed | rna-NM_001179965.1_EthanolRed | cds-NP_116655.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:138210-139538:+ | gene-YFL001W_FaliES1 | rna-NM_001179965.1_FaliES1 | cds-NP_116655.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000451.1:2316-3644:+ | gene-YFL001W_JAY291 | rna-NM_001179965.1_JAY291 | cds-NP_116655.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:138774-140102:+ | gene-YFL001W_MUCL30387 | rna-NM_001179965.1_MUCL30387 | cds-NP_116655.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:136751-138079:+ | gene-YFL001W_MUCL30388 | rna-NM_001179965.1_MUCL30388 | cds-NP_116655.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:136846-138174:+ | gene-YFL001W_MUCL39482 | rna-NM_001179965.1_MUCL39482 | cds-NP_116655.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:136110-137438:+ | gene-YFL001W_MUCL42920 | rna-NM_001179965.1_MUCL42920 | cds-NP_116655.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:147130-148458:+ | gene-YFL001W_NCIM3186 | rna-NM_001179965.1_NCIM3186 | cds-NP_116655.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:137861-139189:+ | gene-YFL001W_NCYC1407 | rna-NM_001179965.1_NCYC1407 | cds-NP_116655.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:156926-158254:+ | gene-YFL001W_PE2H3 | rna-NM_001179965.1_PE2H3 | cds-NP_116655.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:156474-157802:+ | gene-YFL001W_PE2H4 | rna-NM_001179965.1_PE2H4 | cds-NP_116655.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:147131-148459:+ | gene-YFL001W_S288C | rna-NM_001179965.1_S288C | cds-NP_116655.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:175767-177095:- | gene-YFL001W_SA1 | rna-NM_001179965.1_SA1 | cds-NP_116655.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:137370-138698:+ | gene-YFL001W_ThermosaccDry | rna-NM_001179965.1_ThermosaccDry | cds-NP_116655.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:152573-153901:+ | gene-YFL001W_VR1 | rna-NM_001179965.1_VR1 | cds-NP_116655.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:67819-69147:+ | gene-YFL001W_ZTW1 | rna-NM_001179965.1_ZTW1 | cds-NP_116655.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:161017-162345:+ | gene-YFL001W_Sparadoxus | rna-NM_001179965.1_Sparadoxus | cds-NP_116655.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |