Gene name: DDR48
Reference locus (S288C): YMR173W
Gene biotype: protein_coding
Description: Stress protein DDR48; DNA damage-responsive protein; expression is increased in response to heat-shock stress or treatments that produce DNA lesions; contains multiple repeats of the amino acid sequence NNNDSYGS; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): YMR173W-A (0.994); YDR193W (0.712); YHR112C (0.694); DDR2 (0.677); YBL036C (0.621); YML007C-A (0.62); HSP12 (0.588); YBL071C (0.573); YHR056W-A (0.573); YCR013C (0.573); GRE1 (0.572); YIM2 (0.569); YLR163W-A (0.569); YPR136C (0.569); YAL016C-B (0.569); YKL165C-A (0.569); YNL319W (0.565); YMR304C-A (0.558); YGP1 (0.552); GOT1 (0.53)
Homologues (species, bitscore): ENSDARP00000104633 (Danio rerio, 66.2); ENSXETP00000063577 (Xenopus tropicalis, 128.6); Muc91C (Drosophila melanogaster, 91.7); AT1G10390 (Arabidopsis thaliana, 100.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:648437-649739:+ | gene-YMR173W_AKU4011 | rna-NM_001182678.1_AKU4011 | cds-NP_013897.1_AKU4011 | 70.0 | 86.3 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:23226-24392:- | gene-YMR173W_BG1 | rna-NM_001182678.1_BG1 | cds-NP_013897.1_BG1 | 84.2 | 87.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:591365-593225:+ | gene-YMR173W_Bruggeman | rna-NM_001182678.1_Bruggeman | cds-NP_013897.1_Bruggeman | 68.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:595118-596641:+ | gene-YMR173W_CAT1 | rna-NM_001182678.1_CAT1 | cds-NP_013897.1_CAT1 | 82.2 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:581118-582182:+ | gene-YMR173W_CBS1585 | rna-NM_001182678.1_CBS1585 | cds-NP_013897.1_CBS1585 | 71.1 | 78.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:584984-586255:+ | gene-YMR173W_CBS436 | rna-NM_001182678.1_CBS436 | cds-NP_013897.1_CBS436 | 91.9 | 96.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:693323-694724:+ | gene-YMR173W_CBS6412 | rna-NM_001182678.1_CBS6412 | cds-NP_013897.1_CBS6412 | 71.9 | 93.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:579668-581326:+ | gene-YMR173W_CBS6413 | rna-NM_001182678.1_CBS6413 | cds-NP_013897.1_CBS6413 | 72.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:603592-604527:+ | gene-YMR173W_CENPK1137D | rna-NM_001182678.1_CENPK1137D | cds-NP_013897.1_CENPK1137D | 72.3 | 72.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:641294-642558:+ | gene-YMR173W_EthanolRed | rna-NM_001182678.1_EthanolRed | cds-NP_013897.1_EthanolRed | 77.9 | 88.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:586448-587498:+ | gene-YMR173W_FaliES1 | rna-NM_001182678.1_FaliES1 | cds-NP_013897.1_FaliES1 | 71.0 | 77.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000201.1:1-829:- | gene-YMR173W_JAY291 | rna-NM_001182678.1_JAY291 | cds-NP_013897.1_JAY291 | 59.7 | 62.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:586339-587641:+ | gene-YMR173W_MUCL30387 | rna-NM_001182678.1_MUCL30387 | cds-NP_013897.1_MUCL30387 | 86.4 | 94.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:593370-594493:+ | gene-YMR173W_MUCL30388 | rna-NM_001182678.1_MUCL30388 | cds-NP_013897.1_MUCL30388 | 80.6 | 84.9 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:581804-583234:+ | gene-YMR173W_MUCL39482 | rna-NM_001182678.1_MUCL39482 | cds-NP_013897.1_MUCL39482 | 82.0 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:589349-590608:+ | gene-YMR173W_MUCL42920 | rna-NM_001182678.1_MUCL42920 | cds-NP_013897.1_MUCL42920 | 74.9 | 86.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:608643-609935:+ | gene-YMR173W_NCIM3186 | rna-NM_001182678.1_NCIM3186 | cds-NP_013897.1_NCIM3186 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:581506-582869:+ | gene-YMR173W_NCYC1407 | rna-NM_001182678.1_NCYC1407 | cds-NP_013897.1_NCYC1407 | 74.3 | 90.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:591848-592756:+ | gene-YMR173W_PE2H3 | rna-NM_001182678.1_PE2H3 | cds-NP_013897.1_PE2H3 | 69.6 | 70.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:592311-593582:+ | gene-YMR173W_PE2H4 | rna-NM_001182678.1_PE2H4 | cds-NP_013897.1_PE2H4 | 88.4 | 94.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:608689-609981:+ | gene-YMR173W_S288C | rna-NM_001182678.1_S288C | cds-NP_013897.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:198129-199781:- | gene-YMR173W_SA1 | rna-NM_001182678.1_SA1 | cds-NP_013897.1_SA1 | 76.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:582180-584152:+ | gene-YMR173W_ThermosaccDry | rna-NM_001182678.1_ThermosaccDry | cds-NP_013897.1_ThermosaccDry | 64.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:595674-597326:+ | gene-YMR173W_VR1 | rna-NM_001182678.1_VR1 | cds-NP_013897.1_VR1 | 75.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:556803-556921:+ | gene-YMR173W_ZTW1 | rna-NM_001182678.1_ZTW1 | cds-NP_013897.1_ZTW1 | 9.2 | 9.2 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:600474-602069:+ | gene-YMR173W_Sparadoxus | rna-NM_001182678.1_Sparadoxus | cds-NP_013897.1_Sparadoxus | 63.3 | 94.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |