Gene name: DCI1
Reference locus (S288C): YOR180C
Gene biotype: protein_coding
Description: Peroxisomal protein; identification as a delta(3,5)-delta(2,4)-dienoyl-CoA isomerase involved in fatty acid metabolism is disputed; DCI1 has a paralog, ECI1, that arose from the whole genome duplication
Top 10 interactors (score): SPS19 (0.983); FOX2 (0.98); POX1 (0.975); ECI1 (0.966); PRE7 (0.942); PEX5 (0.939); PEX11 (0.938); PEX14 (0.929); PEX7 (0.928); PEX13 (0.911); PEX8 (0.906); POT1 (0.902); PEX17 (0.901); TES1 (0.899); PEX3 (0.889); PEX25 (0.883); PEX12 (0.867); PEX10 (0.863); PEX2 (0.857); PEX27 (0.857)
Homologues (species, bitscore): ECI2 (Homo sapiens, 75.5); Eci3 (Mus musculus, 73.6); zgc:92030 (Danio rerio, 68.2); LOC100490656 (Xenopus tropicalis, 68.2); CG13890 (Drosophila melanogaster, 77.8); ech-4 (Caenorhabditis elegans, 76.3); ECHIA (Arabidopsis thaliana, 60.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:671686-672501:- | gene-YOR180C_AKU4011 | rna-NM_001183599.3_AKU4011 | cds-NP_014823.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:73742-74557:- | gene-YOR180C_BG1 | rna-NM_001183599.3_BG1 | cds-NP_014823.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:655694-656509:- | gene-YOR180C_Bruggeman | rna-NM_001183599.3_Bruggeman | cds-NP_014823.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:656868-657683:- | gene-YOR180C_CAT1 | rna-NM_001183599.3_CAT1 | cds-NP_014823.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:654672-655487:- | gene-YOR180C_CBS1585 | rna-NM_001183599.3_CBS1585 | cds-NP_014823.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:652797-653612:- | gene-YOR180C_CBS436 | rna-NM_001183599.3_CBS436 | cds-NP_014823.3_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:651787-652602:- | gene-YOR180C_CBS6412 | rna-NM_001183599.3_CBS6412 | cds-NP_014823.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:660430-661245:- | gene-YOR180C_CBS6413 | rna-NM_001183599.3_CBS6413 | cds-NP_014823.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:674106-674921:- | gene-YOR180C_CENPK1137D | rna-NM_001183599.3_CENPK1137D | cds-NP_014823.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:647660-648475:- | gene-YOR180C_EthanolRed | rna-NM_001183599.3_EthanolRed | cds-NP_014823.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:652733-653548:- | gene-YOR180C_FaliES1 | rna-NM_001183599.3_FaliES1 | cds-NP_014823.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000038.1:23991-24806:+ | gene-YOR180C_JAY291 | rna-NM_001183599.3_JAY291 | cds-NP_014823.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:660501-661316:- | gene-YOR180C_MUCL30387 | rna-NM_001183599.3_MUCL30387 | cds-NP_014823.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:667915-668730:- | gene-YOR180C_MUCL30388 | rna-NM_001183599.3_MUCL30388 | cds-NP_014823.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:662002-662817:- | gene-YOR180C_MUCL39482 | rna-NM_001183599.3_MUCL39482 | cds-NP_014823.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:671387-672202:- | gene-YOR180C_MUCL42920 | rna-NM_001183599.3_MUCL42920 | cds-NP_014823.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:674241-675056:- | gene-YOR180C_NCIM3186 | rna-NM_001183599.3_NCIM3186 | cds-NP_014823.3_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:662100-662915:- | gene-YOR180C_NCYC1407 | rna-NM_001183599.3_NCYC1407 | cds-NP_014823.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:660925-661740:- | gene-YOR180C_PE2H3 | rna-NM_001183599.3_PE2H3 | cds-NP_014823.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:671302-672117:- | gene-YOR180C_PE2H4 | rna-NM_001183599.3_PE2H4 | cds-NP_014823.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:674352-675167:- | gene-YOR180C_S288C | rna-NM_001183599.3_S288C | cds-NP_014823.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:90922-91737:- | gene-YOR180C_SA1 | rna-NM_001183599.3_SA1 | cds-NP_014823.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:651916-652731:- | gene-YOR180C_ThermosaccDry | rna-NM_001183599.3_ThermosaccDry | cds-NP_014823.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:715956-716771:- | gene-YOR180C_VR1 | rna-NM_001183599.3_VR1 | cds-NP_014823.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:385324-386139:- | gene-YOR180C_ZTW1 | rna-NM_001183599.3_ZTW1 | cds-NP_014823.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:657563-658378:- | gene-YOR180C_Sparadoxus | rna-NM_001183599.3_Sparadoxus | cds-NP_014823.3_Sparadoxus | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |