Gene name: DBP9
Reference locus (S288C): YLR276C
Gene biotype: protein_coding
Description: ATP-dependent RNA helicase DBP9; DEAD-box protein required for 27S rRNA processing; exhibits DNA, RNA and DNA/RNA helicase activities; ATPase activity shows preference for DNA over RNA; DNA helicase activity abolished by mutation in RNA-binding domain; Belongs to the DEAD box helicase family. DDX56/DBP9 subfamily
Top 10 interactors (score): MAK21 (0.999); NOP4 (0.999); NOC2 (0.999); RPF2 (0.999); EBP2 (0.999); BRX1 (0.999); MAK5 (0.998); NOP15 (0.998); RRP5 (0.998); ENP2 (0.997); UTP13 (0.997); NOP2 (0.997); NOP12 (0.997); SSF1 (0.997); MTR4 (0.997); NUG1 (0.996); RRB1 (0.996); DBP3 (0.996); ECM16 (0.996); UTP14 (0.996)
Homologues (species, bitscore): DDX56 (Homo sapiens, 449.5); Ddx56 (Mus musculus, 451.1); ddx56 (Danio rerio, 468.4); ddx56 (Xenopus tropicalis, 456.1); Hlc (Drosophila melanogaster, 377.1); C24H12.4 (Caenorhabditis elegans, 333.6); AT4G34910 (Arabidopsis thaliana, 374.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:643905-645689:- | gene-YLR276C_AKU4011 | rna-NM_001182163.1_AKU4011 | cds-NP_013378.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:86993-88777:+ | gene-YLR276C_BG1 | rna-NM_001182163.1_BG1 | cds-NP_013378.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:678846-680630:- | gene-YLR276C_Bruggeman | rna-NM_001182163.1_Bruggeman | cds-NP_013378.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:677670-679454:- | gene-YLR276C_CAT1 | rna-NM_001182163.1_CAT1 | cds-NP_013378.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:678804-680588:- | gene-YLR276C_CBS1585 | rna-NM_001182163.1_CBS1585 | cds-NP_013378.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:663432-665216:- | gene-YLR276C_CBS436 | rna-NM_001182163.1_CBS436 | cds-NP_013378.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:641438-643222:- | gene-YLR276C_CBS6412 | rna-NM_001182163.1_CBS6412 | cds-NP_013378.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:679446-681230:- | gene-YLR276C_CBS6413 | rna-NM_001182163.1_CBS6413 | cds-NP_013378.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:679678-681462:- | gene-YLR276C_CENPK1137D | rna-NM_001182163.1_CENPK1137D | cds-NP_013378.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:637365-639149:- | gene-YLR276C_EthanolRed | rna-NM_001182163.1_EthanolRed | cds-NP_013378.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:666354-668138:- | gene-YLR276C_FaliES1 | rna-NM_001182163.1_FaliES1 | cds-NP_013378.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000359.1:37611-39395:+ | gene-YLR276C_JAY291 | rna-NM_001182163.1_JAY291 | cds-NP_013378.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:678975-680759:- | gene-YLR276C_MUCL30387 | rna-NM_001182163.1_MUCL30387 | cds-NP_013378.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:684332-686116:- | gene-YLR276C_MUCL30388 | rna-NM_001182163.1_MUCL30388 | cds-NP_013378.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:680031-681815:- | gene-YLR276C_MUCL39482 | rna-NM_001182163.1_MUCL39482 | cds-NP_013378.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:675231-677015:- | gene-YLR276C_MUCL42920 | rna-NM_001182163.1_MUCL42920 | cds-NP_013378.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:695020-696804:- | gene-YLR276C_NCIM3186 | rna-NM_001182163.1_NCIM3186 | cds-NP_013378.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:667289-669073:- | gene-YLR276C_NCYC1407 | rna-NM_001182163.1_NCYC1407 | cds-NP_013378.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:677189-678973:- | gene-YLR276C_PE2H3 | rna-NM_001182163.1_PE2H3 | cds-NP_013378.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:676933-678717:- | gene-YLR276C_PE2H4 | rna-NM_001182163.1_PE2H4 | cds-NP_013378.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:695046-696830:- | gene-YLR276C_S288C | rna-NM_001182163.1_S288C | cds-NP_013378.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:87799-89583:+ | gene-YLR276C_SA1 | rna-NM_001182163.1_SA1 | cds-NP_013378.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:668297-670081:- | gene-YLR276C_ThermosaccDry | rna-NM_001182163.1_ThermosaccDry | cds-NP_013378.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:680224-682008:- | gene-YLR276C_VR1 | rna-NM_001182163.1_VR1 | cds-NP_013378.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:6660-8444:- | gene-YLR276C_ZTW1 | rna-NM_001182163.1_ZTW1 | cds-NP_013378.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:654376-656160:- | gene-YLR276C_Sparadoxus | rna-NM_001182163.1_Sparadoxus | cds-NP_013378.1_Sparadoxus | 91.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |