Gene name: DBP8
Reference locus (S288C): YHR169W
Gene biotype: protein_coding
Description: ATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esf2p
Top 10 interactors (score): PRP43 (0.999); DHR2 (0.999); BMS1 (0.999); ENP1 (0.999); NMD3 (0.999); NOC4 (0.999); KRE33 (0.999); SOF1 (0.999); ECM16 (0.999); UTP13 (0.999); PNO1 (0.999); RRP12 (0.999); UTP18 (0.999); TSR1 (0.999); ESF2 (0.999); PWP2 (0.999); ENP2 (0.999); RRP9 (0.999); ROK1 (0.999); UTP15 (0.999)
Homologues (species, bitscore): DDX49 (Homo sapiens, 377.5); Ddx49 (Mus musculus, 376.7); ddx49 (Danio rerio, 373.2); ddx49 (Xenopus tropicalis, 367.9); Dbp45A (Drosophila melanogaster, 315.5); H20J04.4 (Caenorhabditis elegans, 353.6); RH36 (Arabidopsis thaliana, 344.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:429276-430571:+ | gene-YHR169W_AKU4011 | rna-NM_001179300.1_AKU4011 | cds-NP_012039.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:87169-88464:- | gene-YHR169W_BG1 | rna-NM_001179300.1_BG1 | cds-NP_012039.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:436519-437814:+ | gene-YHR169W_Bruggeman | rna-NM_001179300.1_Bruggeman | cds-NP_012039.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:431920-433215:+ | gene-YHR169W_CAT1 | rna-NM_001179300.1_CAT1 | cds-NP_012039.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:428732-430027:+ | gene-YHR169W_CBS1585 | rna-NM_001179300.1_CBS1585 | cds-NP_012039.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:426173-427468:+ | gene-YHR169W_CBS436 | rna-NM_001179300.1_CBS436 | cds-NP_012039.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:429189-430484:+ | gene-YHR169W_CBS6412 | rna-NM_001179300.1_CBS6412 | cds-NP_012039.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:429616-430911:+ | gene-YHR169W_CBS6413 | rna-NM_001179300.1_CBS6413 | cds-NP_012039.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:435352-436647:+ | gene-YHR169W_CENPK1137D | rna-NM_001179300.1_CENPK1137D | cds-NP_012039.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:487826-489121:+ | gene-YHR169W_EthanolRed | rna-NM_001179300.1_EthanolRed | cds-NP_012039.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:430269-431564:+ | gene-YHR169W_FaliES1 | rna-NM_001179300.1_FaliES1 | cds-NP_012039.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:8280-9575:- | gene-YHR169W_JAY291 | rna-NM_001179300.1_JAY291 | cds-NP_012039.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:437591-438886:+ | gene-YHR169W_MUCL30387 | rna-NM_001179300.1_MUCL30387 | cds-NP_012039.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:437030-438325:+ | gene-YHR169W_MUCL30388 | rna-NM_001179300.1_MUCL30388 | cds-NP_012039.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:428643-429938:+ | gene-YHR169W_MUCL39482 | rna-NM_001179300.1_MUCL39482 | cds-NP_012039.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:435249-436544:+ | gene-YHR169W_MUCL42920 | rna-NM_001179300.1_MUCL42920 | cds-NP_012039.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:442063-443358:+ | gene-YHR169W_NCIM3186 | rna-NM_001179300.1_NCIM3186 | cds-NP_012039.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:431102-432397:+ | gene-YHR169W_NCYC1407 | rna-NM_001179300.1_NCYC1407 | cds-NP_012039.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:430242-431537:+ | gene-YHR169W_PE2H3 | rna-NM_001179300.1_PE2H3 | cds-NP_012039.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:437669-438964:+ | gene-YHR169W_PE2H4 | rna-NM_001179300.1_PE2H4 | cds-NP_012039.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:442181-443476:+ | gene-YHR169W_S288C | rna-NM_001179300.1_S288C | cds-NP_012039.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:8340-9635:- | gene-YHR169W_SA1 | rna-NM_001179300.1_SA1 | cds-NP_012039.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:431352-432647:+ | gene-YHR169W_ThermosaccDry | rna-NM_001179300.1_ThermosaccDry | cds-NP_012039.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:439168-440463:+ | gene-YHR169W_VR1 | rna-NM_001179300.1_VR1 | cds-NP_012039.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:421592-422887:+ | gene-YHR169W_ZTW1 | rna-NM_001179300.1_ZTW1 | cds-NP_012039.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:427688-428983:+ | gene-YHR169W_Sparadoxus | rna-NM_001179300.1_Sparadoxus | cds-NP_012039.1_Sparadoxus | 91.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |