Gene name: DBP7
Reference locus (S288C): YKR024C
Gene biotype: protein_coding
Description: Putative ATP-dependent RNA helicase of the DEAD-box family; involved in ribosomal biogenesis; required at post-transcriptional step for efficient retrotransposition; essential for growth under anaerobic conditions
Top 10 interactors (score): NOC2 (0.997); RPF2 (0.996); RRP12 (0.993); NOG1 (0.993); SOF1 (0.992); MTR4 (0.992); UTP13 (0.992); UTP14 (0.991); PUF6 (0.991); BFR2 (0.991); RRP5 (0.991); PWP2 (0.99); NOG2 (0.99); DBP8 (0.99); UTP15 (0.988); NOP4 (0.987); DBP10 (0.987); DHR2 (0.987); DBP3 (0.987); RRP9 (0.986)
Homologues (species, bitscore): DDX31 (Homo sapiens, 304.3); Ddx31 (Mus musculus, 308.1); ddx31 (Danio rerio, 310.8); ddx31 (Xenopus tropicalis, 295.4); CG8611 (Drosophila melanogaster, 285.4); B0511.6 (Caenorhabditis elegans, 179.5); AT2G40700 (Arabidopsis thaliana, 310.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:470815-473043:- | gene-YKR024C_AKU4011 | rna-NM_001179814.1_AKU4011 | cds-NP_012949.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:170443-172671:+ | gene-YKR024C_BG1 | rna-NM_001179814.1_BG1 | cds-NP_012949.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:492485-494713:- | gene-YKR024C_Bruggeman | rna-NM_001179814.1_Bruggeman | cds-NP_012949.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:488228-490456:- | gene-YKR024C_CAT1 | rna-NM_001179814.1_CAT1 | cds-NP_012949.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:483555-485783:- | gene-YKR024C_CBS1585 | rna-NM_001179814.1_CBS1585 | cds-NP_012949.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:482384-484612:- | gene-YKR024C_CBS436 | rna-NM_001179814.1_CBS436 | cds-NP_012949.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:467716-469944:- | gene-YKR024C_CBS6412 | rna-NM_001179814.1_CBS6412 | cds-NP_012949.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:483383-485611:- | gene-YKR024C_CBS6413 | rna-NM_001179814.1_CBS6413 | cds-NP_012949.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:484886-487114:- | gene-YKR024C_CENPK1137D | rna-NM_001179814.1_CENPK1137D | cds-NP_012949.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:481283-483511:- | gene-YKR024C_EthanolRed | rna-NM_001179814.1_EthanolRed | cds-NP_012949.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:484213-486441:- | gene-YKR024C_FaliES1 | rna-NM_001179814.1_FaliES1 | cds-NP_012949.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:67316-69544:+ | gene-YKR024C_JAY291 | rna-NM_001179814.1_JAY291 | cds-NP_012949.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:491801-494029:- | gene-YKR024C_MUCL30387 | rna-NM_001179814.1_MUCL30387 | cds-NP_012949.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:487494-489722:- | gene-YKR024C_MUCL30388 | rna-NM_001179814.1_MUCL30388 | cds-NP_012949.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:482872-485100:- | gene-YKR024C_MUCL39482 | rna-NM_001179814.1_MUCL39482 | cds-NP_012949.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:488644-490872:- | gene-YKR024C_MUCL42920 | rna-NM_001179814.1_MUCL42920 | cds-NP_012949.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:485133-487361:- | gene-YKR024C_NCIM3186 | rna-NM_001179814.1_NCIM3186 | cds-NP_012949.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:483079-485307:- | gene-YKR024C_NCYC1407 | rna-NM_001179814.1_NCYC1407 | cds-NP_012949.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:508066-510294:- | gene-YKR024C_PE2H3 | rna-NM_001179814.1_PE2H3 | cds-NP_012949.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:492789-495017:- | gene-YKR024C_PE2H4 | rna-NM_001179814.1_PE2H4 | cds-NP_012949.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:485144-487372:- | gene-YKR024C_S288C | rna-NM_001179814.1_S288C | cds-NP_012949.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000078.1:26377-28605:+ | gene-YKR024C_SA1 | rna-NM_001179814.1_SA1 | cds-NP_012949.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:483468-485696:- | gene-YKR024C_ThermosaccDry | rna-NM_001179814.1_ThermosaccDry | cds-NP_012949.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:483086-485314:- | gene-YKR024C_VR1 | rna-NM_001179814.1_VR1 | cds-NP_012949.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:481515-483743:- | gene-YKR024C_ZTW1 | rna-NM_001179814.1_ZTW1 | cds-NP_012949.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:506952-509177:- | gene-YKR024C_Sparadoxus | rna-NM_001179814.1_Sparadoxus | cds-NP_012949.1_Sparadoxus | 89.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |