Gene name: DBP6
Reference locus (S288C): YNR038W
Gene biotype: protein_coding
Description: ATP-dependent RNA helicase DBP6; Essential protein involved in ribosome biogenesis; putative ATP-dependent RNA helicase of the DEAD-box protein family; human homolog DDX51 complements yeast dbp6 mutant
Top 10 interactors (score): YTM1 (0.998); ERB1 (0.997); UTP25 (0.997); RSA3 (0.997); DBP10 (0.996); NUG1 (0.996); NOP7 (0.996); NOC2 (0.996); NOG1 (0.996); NOP15 (0.996); NOC3 (0.995); NOP4 (0.994); SPB1 (0.994); DRS1 (0.994); HAS1 (0.993); PRP43 (0.992); URB1 (0.992); URB2 (0.992); RRP15 (0.992); PUF6 (0.992)
Homologues (species, bitscore): DDX51 (Homo sapiens, 211.5); Ddx51 (Mus musculus, 209.9); ddx51 (Danio rerio, 223.8); ddx51 (Xenopus tropicalis, 203.0); Dbp73D (Drosophila melanogaster, 189.1); Y71G12B.8 (Caenorhabditis elegans, 162.2); RH1 (Arabidopsis thaliana, 187.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:679243-681132:+ | gene-YNR038W_AKU4011 | rna-NM_001183215.1_AKU4011 | cds-NP_014436.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:587155-589044:+ | gene-YNR038W_BG1 | rna-NM_001183215.1_BG1 | cds-NP_014436.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:696691-698580:+ | gene-YNR038W_Bruggeman | rna-NM_001183215.1_Bruggeman | cds-NP_014436.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:730956-732845:+ | gene-YNR038W_CAT1 | rna-NM_001183215.1_CAT1 | cds-NP_014436.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:685018-686907:+ | gene-YNR038W_CBS1585 | rna-NM_001183215.1_CBS1585 | cds-NP_014436.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:746657-748546:+ | gene-YNR038W_CBS436 | rna-NM_001183215.1_CBS436 | cds-NP_014436.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:674183-676072:+ | gene-YNR038W_CBS6412 | rna-NM_001183215.1_CBS6412 | cds-NP_014436.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:675889-677778:+ | gene-YNR038W_CBS6413 | rna-NM_001183215.1_CBS6413 | cds-NP_014436.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:689344-691233:+ | gene-YNR038W_CENPK1137D | rna-NM_001183215.1_CENPK1137D | cds-NP_014436.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:680912-682801:+ | gene-YNR038W_EthanolRed | rna-NM_001183215.1_EthanolRed | cds-NP_014436.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:672115-674004:+ | gene-YNR038W_FaliES1 | rna-NM_001183215.1_FaliES1 | cds-NP_014436.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:28749-30638:- | gene-YNR038W_JAY291 | rna-NM_001183215.1_JAY291 | cds-NP_014436.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:694450-696339:+ | gene-YNR038W_MUCL30387 | rna-NM_001183215.1_MUCL30387 | cds-NP_014436.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:735269-737158:+ | gene-YNR038W_MUCL30388 | rna-NM_001183215.1_MUCL30388 | cds-NP_014436.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:676487-678376:+ | gene-YNR038W_MUCL39482 | rna-NM_001183215.1_MUCL39482 | cds-NP_014436.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:680654-682543:+ | gene-YNR038W_MUCL42920 | rna-NM_001183215.1_MUCL42920 | cds-NP_014436.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:695564-697453:+ | gene-YNR038W_NCIM3186 | rna-NM_001183215.1_NCIM3186 | cds-NP_014436.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:679003-680892:+ | gene-YNR038W_NCYC1407 | rna-NM_001183215.1_NCYC1407 | cds-NP_014436.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:680091-681980:+ | gene-YNR038W_PE2H3 | rna-NM_001183215.1_PE2H3 | cds-NP_014436.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:681409-683298:+ | gene-YNR038W_PE2H4 | rna-NM_001183215.1_PE2H4 | cds-NP_014436.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:695595-697484:+ | gene-YNR038W_S288C | rna-NM_001183215.1_S288C | cds-NP_014436.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000074.1:28897-30786:- | gene-YNR038W_SA1 | rna-NM_001183215.1_SA1 | cds-NP_014436.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:672452-674341:+ | gene-YNR038W_ThermosaccDry | rna-NM_001183215.1_ThermosaccDry | cds-NP_014436.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:714467-716356:+ | gene-YNR038W_VR1 | rna-NM_001183215.1_VR1 | cds-NP_014436.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:581854-583743:+ | gene-YNR038W_ZTW1 | rna-NM_001183215.1_ZTW1 | cds-NP_014436.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:686529-688415:+ | gene-YNR038W_Sparadoxus | rna-NM_001183215.1_Sparadoxus | cds-NP_014436.1_Sparadoxus | 89.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |