Gene name: DBP5
Reference locus (S288C): YOR046C
Gene biotype: protein_coding
Description: Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family; involved in mRNA export from the nucleus, remodeling messenger ribonucleoprotein particles (mRNPs), with ATPase activity stimulated by Gle1p, IP6 and Nup159p; involved in translation termination along with Sup45p (eRF1); role in the cellular response to heat stress
Top 10 interactors (score): MEX67 (0.999); GLE1 (0.999); NUP159 (0.999); NUP42 (0.998); CRM1 (0.992); NUP2 (0.977); NUP116 (0.977); GFD1 (0.966); RPL25 (0.945); NAB2 (0.945); NMD3 (0.944); HAS1 (0.942); NUP82 (0.942); DBP6 (0.941); DRS1 (0.938); DBP3 (0.938); YRA1 (0.937); MRT4 (0.933); RPL35B (0.931); LOC1 (0.929)
Homologues (species, bitscore): DDX19A (Homo sapiens, 444.9); Ddx19a (Mus musculus, 447.6); ddx19 (Danio rerio, 437.6); ddx19b (Xenopus tropicalis, 407.9); Dbp80 (Drosophila melanogaster, 361.7); ddx-19 (Caenorhabditis elegans, 323.6); LOS4 (Arabidopsis thaliana, 315.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:398800-400248:- | gene-YOR046C_AKU4011 | rna-NM_001183465.1_AKU4011 | cds-NP_014689.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:214398-215846:- | gene-YOR046C_BG1 | rna-NM_001183465.1_BG1 | cds-NP_014689.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:401538-402986:- | gene-YOR046C_Bruggeman | rna-NM_001183465.1_Bruggeman | cds-NP_014689.1_Bruggeman | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:399718-401166:- | gene-YOR046C_CAT1 | rna-NM_001183465.1_CAT1 | cds-NP_014689.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:393491-394939:- | gene-YOR046C_CBS1585 | rna-NM_001183465.1_CBS1585 | cds-NP_014689.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:397863-399311:- | gene-YOR046C_CBS436 | rna-NM_001183465.1_CBS436 | cds-NP_014689.1_CBS436 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:392845-394293:- | gene-YOR046C_CBS6412 | rna-NM_001183465.1_CBS6412 | cds-NP_014689.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:400221-401669:- | gene-YOR046C_CBS6413 | rna-NM_001183465.1_CBS6413 | cds-NP_014689.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:414457-415905:- | gene-YOR046C_CENPK1137D | rna-NM_001183465.1_CENPK1137D | cds-NP_014689.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:395498-396946:- | gene-YOR046C_EthanolRed | rna-NM_001183465.1_EthanolRed | cds-NP_014689.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:398845-400293:- | gene-YOR046C_FaliES1 | rna-NM_001183465.1_FaliES1 | cds-NP_014689.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000035.1:69515-70962:- | gene-YOR046C_JAY291 | rna-NM_001183465.1_JAY291 | cds-NP_014689.1_JAY291 | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:406329-407777:- | gene-YOR046C_MUCL30387 | rna-NM_001183465.1_MUCL30387 | cds-NP_014689.1_MUCL30387 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:409632-411080:- | gene-YOR046C_MUCL30388 | rna-NM_001183465.1_MUCL30388 | cds-NP_014689.1_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:400974-402422:- | gene-YOR046C_MUCL39482 | rna-NM_001183465.1_MUCL39482 | cds-NP_014689.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:415810-417258:- | gene-YOR046C_MUCL42920 | rna-NM_001183465.1_MUCL42920 | cds-NP_014689.1_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:414348-415796:- | gene-YOR046C_NCIM3186 | rna-NM_001183465.1_NCIM3186 | cds-NP_014689.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:407676-409124:- | gene-YOR046C_NCYC1407 | rna-NM_001183465.1_NCYC1407 | cds-NP_014689.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:406534-407982:- | gene-YOR046C_PE2H3 | rna-NM_001183465.1_PE2H3 | cds-NP_014689.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:416915-418363:- | gene-YOR046C_PE2H4 | rna-NM_001183465.1_PE2H4 | cds-NP_014689.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:414459-415907:- | gene-YOR046C_S288C | rna-NM_001183465.1_S288C | cds-NP_014689.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:382401-383849:- | gene-YOR046C_SA1 | rna-NM_001183465.1_SA1 | cds-NP_014689.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:397385-398833:- | gene-YOR046C_ThermosaccDry | rna-NM_001183465.1_ThermosaccDry | cds-NP_014689.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:398293-399734:- | gene-YOR046C_VR1 | rna-NM_001183465.1_VR1 | cds-NP_014689.1_VR1 | 94.7 | 98.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:132030-133478:- | gene-YOR046C_ZTW1 | rna-NM_001183465.1_ZTW1 | cds-NP_014689.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:404836-406290:- | gene-YOR046C_Sparadoxus | rna-NM_001183465.1_Sparadoxus | cds-NP_014689.1_Sparadoxus | 91.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |