Gene name: DBP3
Reference locus (S288C): YGL078C
Gene biotype: protein_coding
Description: ATP-dependent RNA helicase DBP3; RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype
Top 10 interactors (score): NOP7 (0.999); NOG1 (0.999); NOP4 (0.999); PUF6 (0.999); NOC2 (0.999); ARX1 (0.999); NUG1 (0.999); NOG2 (0.999); EBP2 (0.999); SSF1 (0.999); MRT4 (0.999); PRP43 (0.999); NOP15 (0.999); RPF2 (0.999); NOP2 (0.999); RRS1 (0.999); SPB1 (0.999); DRS1 (0.999); RLP24 (0.999); NOP12 (0.999)
Homologues (species, bitscore): DDX17 (Homo sapiens, 322.4); Ddx17 (Mus musculus, 322.8); ddx5 (Danio rerio, 327.4); ddx5 (Xenopus tropicalis, 320.9); CG10077 (Drosophila melanogaster, 338.2); F58E10.3 (Caenorhabditis elegans, 343.2); STRS1 (Arabidopsis thaliana, 422.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:363295-364866:- | gene-YGL078C_AKU4011 | rna-NM_001180943.3_AKU4011 | cds-NP_011437.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:40539-42110:+ | gene-YGL078C_BG1 | rna-NM_001180943.3_BG1 | cds-NP_011437.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:365777-367348:- | gene-YGL078C_Bruggeman | rna-NM_001180943.3_Bruggeman | cds-NP_011437.3_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:362692-364263:- | gene-YGL078C_CAT1 | rna-NM_001180943.3_CAT1 | cds-NP_011437.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:366620-368191:- | gene-YGL078C_CBS1585 | rna-NM_001180943.3_CBS1585 | cds-NP_011437.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:360904-362475:- | gene-YGL078C_CBS436 | rna-NM_001180943.3_CBS436 | cds-NP_011437.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:351000-352571:- | gene-YGL078C_CBS6412 | rna-NM_001180943.3_CBS6412 | cds-NP_011437.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:360924-362495:- | gene-YGL078C_CBS6413 | rna-NM_001180943.3_CBS6413 | cds-NP_011437.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:360477-362048:- | gene-YGL078C_CENPK1137D | rna-NM_001180943.3_CENPK1137D | cds-NP_011437.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:352368-353939:- | gene-YGL078C_EthanolRed | rna-NM_001180943.3_EthanolRed | cds-NP_011437.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:354929-356500:- | gene-YGL078C_FaliES1 | rna-NM_001180943.3_FaliES1 | cds-NP_011437.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000369.1:40562-42133:- | gene-YGL078C_JAY291 | rna-NM_001180943.3_JAY291 | cds-NP_011437.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:362754-364325:- | gene-YGL078C_MUCL30387 | rna-NM_001180943.3_MUCL30387 | cds-NP_011437.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:365739-367310:- | gene-YGL078C_MUCL30388 | rna-NM_001180943.3_MUCL30388 | cds-NP_011437.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:363148-364719:- | gene-YGL078C_MUCL39482 | rna-NM_001180943.3_MUCL39482 | cds-NP_011437.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:368037-369608:- | gene-YGL078C_MUCL42920 | rna-NM_001180943.3_MUCL42920 | cds-NP_011437.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:360288-361859:- | gene-YGL078C_NCIM3186 | rna-NM_001180943.3_NCIM3186 | cds-NP_011437.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:354683-356254:- | gene-YGL078C_NCYC1407 | rna-NM_001180943.3_NCYC1407 | cds-NP_011437.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:356329-357900:- | gene-YGL078C_PE2H3 | rna-NM_001180943.3_PE2H3 | cds-NP_011437.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:361312-362883:- | gene-YGL078C_PE2H4 | rna-NM_001180943.3_PE2H4 | cds-NP_011437.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:360288-361859:- | gene-YGL078C_S288C | rna-NM_001180943.3_S288C | cds-NP_011437.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000089.1:37689-39260:- | gene-YGL078C_SA1 | rna-NM_001180943.3_SA1 | cds-NP_011437.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:355182-356753:- | gene-YGL078C_ThermosaccDry | rna-NM_001180943.3_ThermosaccDry | cds-NP_011437.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:465056-466627:- | gene-YGL078C_VR1 | rna-NM_001180943.3_VR1 | cds-NP_011437.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:352545-354116:- | gene-YGL078C_ZTW1 | rna-NM_001180943.3_ZTW1 | cds-NP_011437.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:358149-359717:- | gene-YGL078C_Sparadoxus | rna-NM_001180943.3_Sparadoxus | cds-NP_011437.3_Sparadoxus | 91.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |