Gene name: DBP2
Reference locus (S288C): YNL112W
Gene biotype: protein_coding
Description: ATP-dependent RNA helicase of the DEAD-box protein family; has strong preference for dsRNA; interacts with YRA1; required for assembly of Yra1p, Nab2p and Mex67p onto mRNA and formation of nuclear mRNP; involved in mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites
Top 10 interactors (score): PRP43 (0.999); RNT1 (0.999); SDA1 (0.993); DRS1 (0.992); NOP7 (0.992); DHR2 (0.991); NSR1 (0.99); KRE33 (0.982); HAS1 (0.982); BMS1 (0.981); HCA4 (0.981); NOP1 (0.98); SPB1 (0.976); MAK5 (0.974); NOP58 (0.972); HMT1 (0.971); NOG2 (0.971); NUG1 (0.969); NOG1 (0.968); MTR4 (0.966)
Homologues (species, bitscore): DDX5 (Homo sapiens, 589.0); Ddx5 (Mus musculus, 588.6); ddx5 (Danio rerio, 594.0); ddx5 (Xenopus tropicalis, 589.7); CG10077 (Drosophila melanogaster, 577.0); F58E10.3 (Caenorhabditis elegans, 516.2); RH20 (Arabidopsis thaliana, 593.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:407305-409922:+ | gene-YNL112W_AKU4011 | rna-NM_001182950.3_AKU4011 | cds-NP_014287.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:311304-313931:+ | gene-YNL112W_BG1 | rna-NM_001182950.3_BG1 | cds-NP_014287.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:418032-420653:+ | gene-YNL112W_Bruggeman | rna-NM_001182950.3_Bruggeman | cds-NP_014287.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:461078-463694:+ | gene-YNL112W_CAT1 | rna-NM_001182950.3_CAT1 | cds-NP_014287.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:407911-410537:+ | gene-YNL112W_CBS1585 | rna-NM_001182950.3_CBS1585 | cds-NP_014287.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:476336-478965:+ | gene-YNL112W_CBS436 | rna-NM_001182950.3_CBS436 | cds-NP_014287.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:403395-406010:+ | gene-YNL112W_CBS6412 | rna-NM_001182950.3_CBS6412 | cds-NP_014287.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:404397-407013:+ | gene-YNL112W_CBS6413 | rna-NM_001182950.3_CBS6413 | cds-NP_014287.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:407485-410133:+ | gene-YNL112W_CENPK1137D | rna-NM_001182950.3_CENPK1137D | cds-NP_014287.3_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:404308-406942:+ | gene-YNL112W_EthanolRed | rna-NM_001182950.3_EthanolRed | cds-NP_014287.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:400204-402838:+ | gene-YNL112W_FaliES1 | rna-NM_001182950.3_FaliES1 | cds-NP_014287.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000021.1:56591-59220:+ | gene-YNL112W_JAY291 | rna-NM_001182950.3_JAY291 | cds-NP_014287.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:414199-416823:+ | gene-YNL112W_MUCL30387 | rna-NM_001182950.3_MUCL30387 | cds-NP_014287.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:449363-451966:+ | gene-YNL112W_MUCL30388 | rna-NM_001182950.3_MUCL30388 | cds-NP_014287.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:405215-407930:+ | gene-YNL112W_MUCL39482 | rna-NM_001182950.3_MUCL39482 | cds-NP_014287.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:409331-411965:+ | gene-YNL112W_MUCL42920 | rna-NM_001182950.3_MUCL42920 | cds-NP_014287.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:413608-416250:+ | gene-YNL112W_NCIM3186 | rna-NM_001182950.3_NCIM3186 | cds-NP_014287.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:407358-410067:+ | gene-YNL112W_NCYC1407 | rna-NM_001182950.3_NCYC1407 | cds-NP_014287.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:406340-408991:+ | gene-YNL112W_PE2H3 | rna-NM_001182950.3_PE2H3 | cds-NP_014287.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:405746-408397:+ | gene-YNL112W_PE2H4 | rna-NM_001182950.3_PE2H4 | cds-NP_014287.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:413639-416281:+ | gene-YNL112W_S288C | rna-NM_001182950.3_S288C | cds-NP_014287.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000113.1:223-1495:+ | gene-YNL112W_SA1 | rna-NM_001182950.3_SA1 | cds-NP_014287.3_SA1 | 77.1 | 77.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:401076-403710:+ | gene-YNL112W_ThermosaccDry | rna-NM_001182950.3_ThermosaccDry | cds-NP_014287.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:419717-422409:+ | gene-YNL112W_VR1 | rna-NM_001182950.3_VR1 | cds-NP_014287.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:310895-313528:+ | gene-YNL112W_ZTW1 | rna-NM_001182950.3_ZTW1 | cds-NP_014287.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:411953-414597:+ | gene-YNL112W_Sparadoxus | rna-NM_001182950.3_Sparadoxus | cds-NP_014287.3_Sparadoxus | 94.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |