Gene name: DBP10
Reference locus (S288C): YDL031W
Gene biotype: protein_coding
Description: Putative ATP-dependent RNA helicase of the DEAD-box protein family; constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily
Top 10 interactors (score): NOP12 (0.999); HAS1 (0.999); DRS1 (0.999); RLP24 (0.999); SPB1 (0.999); NOP15 (0.999); RPF2 (0.999); NOP2 (0.999); RPF1 (0.999); RRS1 (0.999); NOG2 (0.999); NOP7 (0.999); SSF1 (0.999); EBP2 (0.999); MAK16 (0.999); NOC2 (0.999); PUF6 (0.999); DBP3 (0.999); ERB1 (0.999); NUG1 (0.999)
Homologues (species, bitscore): DDX54 (Homo sapiens, 501.1); Ddx54 (Mus musculus, 509.6); ddx54 (Danio rerio, 465.7); ddx54 (Xenopus tropicalis, 496.1); CG32344 (Drosophila melanogaster, 431.4); Y94H6A.5 (Caenorhabditis elegans, 460.7); AT1G77030 (Arabidopsis thaliana, 462.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:380293-383280:+ | gene-YDL031W_AKU4011 | rna-NM_001180090.2_AKU4011 | cds-NP_010253.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:166589-169576:- | gene-YDL031W_BG1 | rna-NM_001180090.2_BG1 | cds-NP_010253.2_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:398959-401946:+ | gene-YDL031W_Bruggeman | rna-NM_001180090.2_Bruggeman | cds-NP_010253.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:393501-396488:+ | gene-YDL031W_CAT1 | rna-NM_001180090.2_CAT1 | cds-NP_010253.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:376708-379695:+ | gene-YDL031W_CBS1585 | rna-NM_001180090.2_CBS1585 | cds-NP_010253.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:394240-397227:+ | gene-YDL031W_CBS436 | rna-NM_001180090.2_CBS436 | cds-NP_010253.2_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:374503-377490:+ | gene-YDL031W_CBS6412 | rna-NM_001180090.2_CBS6412 | cds-NP_010253.2_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:396470-399457:+ | gene-YDL031W_CBS6413 | rna-NM_001180090.2_CBS6413 | cds-NP_010253.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:393076-396063:+ | gene-YDL031W_CENPK1137D | rna-NM_001180090.2_CENPK1137D | cds-NP_010253.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:389123-392110:+ | gene-YDL031W_EthanolRed | rna-NM_001180090.2_EthanolRed | cds-NP_010253.2_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:395315-398302:+ | gene-YDL031W_FaliES1 | rna-NM_001180090.2_FaliES1 | cds-NP_010253.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000370.1:9859-12846:+ | gene-YDL031W_JAY291 | rna-NM_001180090.2_JAY291 | cds-NP_010253.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:394690-397677:+ | gene-YDL031W_MUCL30387 | rna-NM_001180090.2_MUCL30387 | cds-NP_010253.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:385204-388191:+ | gene-YDL031W_MUCL30388 | rna-NM_001180090.2_MUCL30388 | cds-NP_010253.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:377886-380873:+ | gene-YDL031W_MUCL39482 | rna-NM_001180090.2_MUCL39482 | cds-NP_010253.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:300250-303237:+ | gene-YDL031W_MUCL42920 | rna-NM_001180090.2_MUCL42920 | cds-NP_010253.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:394140-397127:+ | gene-YDL031W_NCIM3186 | rna-NM_001180090.2_NCIM3186 | cds-NP_010253.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:377801-380788:+ | gene-YDL031W_NCYC1407 | rna-NM_001180090.2_NCYC1407 | cds-NP_010253.2_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:385340-388327:+ | gene-YDL031W_PE2H3 | rna-NM_001180090.2_PE2H3 | cds-NP_010253.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:384698-387685:+ | gene-YDL031W_PE2H4 | rna-NM_001180090.2_PE2H4 | cds-NP_010253.2_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:394217-397204:+ | gene-YDL031W_S288C | rna-NM_001180090.2_S288C | cds-NP_010253.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:37734-40721:- | gene-YDL031W_SA1 | rna-NM_001180090.2_SA1 | cds-NP_010253.2_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:394773-397760:+ | gene-YDL031W_ThermosaccDry | rna-NM_001180090.2_ThermosaccDry | cds-NP_010253.2_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:397834-400821:+ | gene-YDL031W_VR1 | rna-NM_001180090.2_VR1 | cds-NP_010253.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:392675-395662:+ | gene-YDL031W_ZTW1 | rna-NM_001180090.2_ZTW1 | cds-NP_010253.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:396889-399876:+ | gene-YDL031W_Sparadoxus | rna-NM_001180090.2_Sparadoxus | cds-NP_010253.2_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |