Gene name: CYM1
Reference locus (S288C): YDR430C
Gene biotype: protein_coding
Description: Mitochondrial presequence protease; Lysine-specific metalloprotease of the pitrilysin family; metalloprotease of the intermembrane space; degrades proteins and presequence peptides cleaved from imported proteins; required for normal mitochondrial morphology
Top 10 interactors (score): OCT1 (0.938); JAC1 (0.914); HSP60 (0.909); YFH1 (0.908); GCN1 (0.903); ARG3 (0.9); MCD1 (0.892); STE23 (0.881); PRD1 (0.827); PDX1 (0.822); MAS1 (0.808); LAT1 (0.805); PDA1 (0.783); LPD1 (0.764); PUF3 (0.763); PDB1 (0.76); MAS2 (0.736); MPM1 (0.658); HOT13 (0.647); VPS41 (0.639)
Homologues (species, bitscore): PITRM1 (Homo sapiens, 614.4); Pitrm1 (Mus musculus, 610.1); pitrm1 (Danio rerio, 594.7); pitrm1 (Xenopus tropicalis, 490.0); CG3107 (Drosophila melanogaster, 502.7); C05D11.1 (Caenorhabditis elegans, 85.5); PREP2 (Arabidopsis thaliana, 392.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1265769-1268738:- | gene-YDR430C_AKU4011 | rna-NM_001180738.1_AKU4011 | cds-NP_010718.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:144108-147077:- | gene-YDR430C_BG1 | rna-NM_001180738.1_BG1 | cds-NP_010718.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1296156-1299125:- | gene-YDR430C_Bruggeman | rna-NM_001180738.1_Bruggeman | cds-NP_010718.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1274350-1277319:- | gene-YDR430C_CAT1 | rna-NM_001180738.1_CAT1 | cds-NP_010718.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1260098-1263067:- | gene-YDR430C_CBS1585 | rna-NM_001180738.1_CBS1585 | cds-NP_010718.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1279430-1282399:- | gene-YDR430C_CBS436 | rna-NM_001180738.1_CBS436 | cds-NP_010718.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1256064-1259033:- | gene-YDR430C_CBS6412 | rna-NM_001180738.1_CBS6412 | cds-NP_010718.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1278213-1281182:- | gene-YDR430C_CBS6413 | rna-NM_001180738.1_CBS6413 | cds-NP_010718.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1324179-1327148:- | gene-YDR430C_CENPK1137D | rna-NM_001180738.1_CENPK1137D | cds-NP_010718.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1269346-1272315:- | gene-YDR430C_EthanolRed | rna-NM_001180738.1_EthanolRed | cds-NP_010718.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1272653-1275622:- | gene-YDR430C_FaliES1 | rna-NM_001180738.1_FaliES1 | cds-NP_010718.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000263.1:16932-19900:- | gene-YDR430C_JAY291 | rna-NM_001180738.1_JAY291 | cds-NP_010718.1_JAY291 | 99.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1279798-1282767:- | gene-YDR430C_MUCL30387 | rna-NM_001180738.1_MUCL30387 | cds-NP_010718.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1261734-1264703:- | gene-YDR430C_MUCL30388 | rna-NM_001180738.1_MUCL30388 | cds-NP_010718.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1251590-1254559:- | gene-YDR430C_MUCL39482 | rna-NM_001180738.1_MUCL39482 | cds-NP_010718.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1193990-1196959:- | gene-YDR430C_MUCL42920 | rna-NM_001180738.1_MUCL42920 | cds-NP_010718.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1325424-1328393:- | gene-YDR430C_NCIM3186 | rna-NM_001180738.1_NCIM3186 | cds-NP_010718.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1265354-1268323:- | gene-YDR430C_NCYC1407 | rna-NM_001180738.1_NCYC1407 | cds-NP_010718.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1276175-1279144:- | gene-YDR430C_PE2H3 | rna-NM_001180738.1_PE2H3 | cds-NP_010718.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1281743-1284712:- | gene-YDR430C_PE2H4 | rna-NM_001180738.1_PE2H4 | cds-NP_010718.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1325501-1328470:- | gene-YDR430C_S288C | rna-NM_001180738.1_S288C | cds-NP_010718.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000082.1:28747-31716:+ | gene-YDR430C_SA1 | rna-NM_001180738.1_SA1 | cds-NP_010718.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1276915-1279884:- | gene-YDR430C_ThermosaccDry | rna-NM_001180738.1_ThermosaccDry | cds-NP_010718.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1292137-1295106:- | gene-YDR430C_VR1 | rna-NM_001180738.1_VR1 | cds-NP_010718.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:319557-322526:- | gene-YDR430C_ZTW1 | rna-NM_001180738.1_ZTW1 | cds-NP_010718.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1273310-1276279:- | gene-YDR430C_Sparadoxus | rna-NM_001180738.1_Sparadoxus | cds-NP_010718.1_Sparadoxus | 89.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |