Gene name: CYC7
Reference locus (S288C): YEL039C
Gene biotype: protein_coding
Description: Cytochrome c isoform 2, expressed under hypoxic conditions; also known as iso-2-cytochrome c; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration; protein abundance increases in response to DNA replication stress; CYC7 has a paralog, CYC1, that arose from the whole genome duplication
Top 10 interactors (score): CYT1 (0.999); QCR6 (0.999); RIP1 (0.999); QCR7 (0.996); QCR9 (0.994); QCR8 (0.994); COR1 (0.991); COB (0.99); CYC3 (0.978); COX5B (0.96); BI4 (0.951); COX4 (0.95); CYC1 (0.942); MAS1 (0.934); HSP10 (0.934); QCR2 (0.929); MAS2 (0.929); COX6 (0.927); CTT1 (0.916); CTM1 (0.908)
Homologues (species, bitscore): CYCS (Homo sapiens, 138.7); Gm10053 (Mus musculus, 141.7); cycsb (Danio rerio, 136.0); cycs (Xenopus tropicalis, 142.1); Cyt-c-p (Drosophila melanogaster, 141.7); cyc-2.1 (Caenorhabditis elegans, 116.3); CYTC-1 (Arabidopsis thaliana, 137.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:73698-74039:- | gene-YEL039C_AKU4011 | rna-NM_001178854.1_AKU4011 | cds-NP_010875.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000075.1:6510-6851:+ | gene-YEL039C_BG1 | rna-NM_001178854.1_BG1 | cds-NP_010875.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:77845-78186:- | gene-YEL039C_Bruggeman | rna-NM_001178854.1_Bruggeman | cds-NP_010875.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:75628-75969:- | gene-YEL039C_CAT1 | rna-NM_001178854.1_CAT1 | cds-NP_010875.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:73646-73987:- | gene-YEL039C_CBS1585 | rna-NM_001178854.1_CBS1585 | cds-NP_010875.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:75271-75612:- | gene-YEL039C_CBS436 | rna-NM_001178854.1_CBS436 | cds-NP_010875.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:73898-74239:- | gene-YEL039C_CBS6412 | rna-NM_001178854.1_CBS6412 | cds-NP_010875.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:78538-78879:- | gene-YEL039C_CBS6413 | rna-NM_001178854.1_CBS6413 | cds-NP_010875.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:77486-77827:- | gene-YEL039C_CENPK1137D | rna-NM_001178854.1_CENPK1137D | cds-NP_010875.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:73452-73793:- | gene-YEL039C_EthanolRed | rna-NM_001178854.1_EthanolRed | cds-NP_010875.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:73718-74059:- | gene-YEL039C_FaliES1 | rna-NM_001178854.1_FaliES1 | cds-NP_010875.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000022.1:5761-6102:+ | gene-YEL039C_JAY291 | rna-NM_001178854.1_JAY291 | cds-NP_010875.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:77899-78240:- | gene-YEL039C_MUCL30387 | rna-NM_001178854.1_MUCL30387 | cds-NP_010875.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:73689-74030:- | gene-YEL039C_MUCL30388 | rna-NM_001178854.1_MUCL30388 | cds-NP_010875.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:73015-73356:- | gene-YEL039C_MUCL39482 | rna-NM_001178854.1_MUCL39482 | cds-NP_010875.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:77640-77981:- | gene-YEL039C_MUCL42920 | rna-NM_001178854.1_MUCL42920 | cds-NP_010875.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:79635-79976:- | gene-YEL039C_NCIM3186 | rna-NM_001178854.1_NCIM3186 | cds-NP_010875.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:78109-78450:- | gene-YEL039C_NCYC1407 | rna-NM_001178854.1_NCYC1407 | cds-NP_010875.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:82131-82472:- | gene-YEL039C_PE2H3 | rna-NM_001178854.1_PE2H3 | cds-NP_010875.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:78046-78387:- | gene-YEL039C_PE2H4 | rna-NM_001178854.1_PE2H4 | cds-NP_010875.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:79636-79977:- | gene-YEL039C_S288C | rna-NM_001178854.1_S288C | cds-NP_010875.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000053.1:6583-6924:+ | gene-YEL039C_SA1 | rna-NM_001178854.1_SA1 | cds-NP_010875.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:74117-74458:- | gene-YEL039C_ThermosaccDry | rna-NM_001178854.1_ThermosaccDry | cds-NP_010875.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:73334-73675:- | gene-YEL039C_VR1 | rna-NM_001178854.1_VR1 | cds-NP_010875.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:73050-73391:- | gene-YEL039C_ZTW1 | rna-NM_001178854.1_ZTW1 | cds-NP_010875.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:75667-76008:- | gene-YEL039C_Sparadoxus | rna-NM_001178854.1_Sparadoxus | cds-NP_010875.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |