Gene name: CWC25
Reference locus (S288C): YNL245C
Gene biotype: protein_coding
Description: U2-type spliceosomal complex subunit CWC25; Pre-mRNA-splicing factor CWC25; Splicing factor required for the first step of pre-mRNA splicing; binding to the spliceosome requires Prp2p and Yju2p; heat-stable protein; has similarity to S. pombe Cwf25p; Belongs to the CWC25 family
Top 10 interactors (score): CWC2 (0.999); PRP16 (0.999); PRP19 (0.999); SNT309 (0.999); CDC40 (0.999); BUD31 (0.999); YJU2 (0.999); CEF1 (0.999); CWC22 (0.997); BRR2 (0.996); CWC15 (0.996); SNU114 (0.995); SLU7 (0.995); LEA1 (0.995); SYF1 (0.995); PRP18 (0.994); PRP22 (0.991); PRP45 (0.991); CWC24 (0.991); CWC21 (0.99)
Homologues (species, bitscore): CWC25 (Homo sapiens, 59.7); Cwc25 (Mus musculus, 59.7); cwc25 (Danio rerio, 67.8); cwc25 (Xenopus tropicalis, 58.5); Cwc25 (Drosophila melanogaster, 74.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:180131-180670:- | gene-YNL245C_AKU4011 | rna-NM_001183083.1_AKU4011 | cds-NP_014154.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:84075-84614:- | gene-YNL245C_BG1 | rna-NM_001183083.1_BG1 | cds-NP_014154.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:189938-190477:- | gene-YNL245C_Bruggeman | rna-NM_001183083.1_Bruggeman | cds-NP_014154.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:197233-197772:- | gene-YNL245C_CAT1 | rna-NM_001183083.1_CAT1 | cds-NP_014154.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:180528-181067:- | gene-YNL245C_CBS1585 | rna-NM_001183083.1_CBS1585 | cds-NP_014154.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:175618-176157:- | gene-YNL245C_CBS436 | rna-NM_001183083.1_CBS436 | cds-NP_014154.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:176569-177108:- | gene-YNL245C_CBS6412 | rna-NM_001183083.1_CBS6412 | cds-NP_014154.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:177210-177749:- | gene-YNL245C_CBS6413 | rna-NM_001183083.1_CBS6413 | cds-NP_014154.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:180157-180696:- | gene-YNL245C_CENPK1137D | rna-NM_001183083.1_CENPK1137D | cds-NP_014154.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:177788-178327:- | gene-YNL245C_EthanolRed | rna-NM_001183083.1_EthanolRed | cds-NP_014154.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:172523-173062:- | gene-YNL245C_FaliES1 | rna-NM_001183083.1_FaliES1 | cds-NP_014154.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:83668-84207:- | gene-YNL245C_JAY291 | rna-NM_001183083.1_JAY291 | cds-NP_014154.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:185721-186260:- | gene-YNL245C_MUCL30387 | rna-NM_001183083.1_MUCL30387 | cds-NP_014154.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:184304-184843:- | gene-YNL245C_MUCL30388 | rna-NM_001183083.1_MUCL30388 | cds-NP_014154.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:178018-178557:- | gene-YNL245C_MUCL39482 | rna-NM_001183083.1_MUCL39482 | cds-NP_014154.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:180277-180816:- | gene-YNL245C_MUCL42920 | rna-NM_001183083.1_MUCL42920 | cds-NP_014154.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:186315-186854:- | gene-YNL245C_NCIM3186 | rna-NM_001183083.1_NCIM3186 | cds-NP_014154.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:180110-180649:- | gene-YNL245C_NCYC1407 | rna-NM_001183083.1_NCYC1407 | cds-NP_014154.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:177011-177550:- | gene-YNL245C_PE2H3 | rna-NM_001183083.1_PE2H3 | cds-NP_014154.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:176399-176938:- | gene-YNL245C_PE2H4 | rna-NM_001183083.1_PE2H4 | cds-NP_014154.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:186346-186885:- | gene-YNL245C_S288C | rna-NM_001183083.1_S288C | cds-NP_014154.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:65408-65947:+ | gene-YNL245C_SA1 | rna-NM_001183083.1_SA1 | cds-NP_014154.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:173379-173918:- | gene-YNL245C_ThermosaccDry | rna-NM_001183083.1_ThermosaccDry | cds-NP_014154.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:192268-192807:- | gene-YNL245C_VR1 | rna-NM_001183083.1_VR1 | cds-NP_014154.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:83701-84240:- | gene-YNL245C_ZTW1 | rna-NM_001183083.1_ZTW1 | cds-NP_014154.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:183636-184175:- | gene-YNL245C_Sparadoxus | rna-NM_001183083.1_Sparadoxus | cds-NP_014154.1_Sparadoxus | 88.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |