Gene name: CWC24
Reference locus (S288C): YLR323C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor CWC24; General splicing factor; required for stable U2 snRNP binding to primary transcripts; essential for the first step of splicing; component of the pre-catalytic spliceosome complex containing Cef1p; similar to S. pombe Cwf24p; Belongs to the CWC24 family
Top 10 interactors (score): CEF1 (0.999); PRP19 (0.999); BRR2 (0.998); CDC40 (0.997); BUD31 (0.997); CUS1 (0.995); CWC2 (0.992); CWC22 (0.991); CWC25 (0.991); SNT309 (0.99); PRP2 (0.989); BUD13 (0.988); CWC27 (0.985); PRP11 (0.985); HSH155 (0.983); SLU7 (0.982); ECM2 (0.979); IST3 (0.978); CWC21 (0.977); PML1 (0.975)
Homologues (species, bitscore): RNF113A (Homo sapiens, 144.8); Rnf113a2 (Mus musculus, 146.4); rnf113a (Danio rerio, 150.6); LOC548788 (Xenopus tropicalis, 149.4); mdlc (Drosophila melanogaster, 143.7); rnf-113 (Caenorhabditis elegans, 123.6); AT1G01350 (Arabidopsis thaliana, 140.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:726626-727405:- | gene-YLR323C_AKU4011 | rna-NM_001182212.1_AKU4011 | cds-NP_013427.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:5276-6055:+ | gene-YLR323C_BG1 | rna-NM_001182212.1_BG1 | cds-NP_013427.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:762459-763238:- | gene-YLR323C_Bruggeman | rna-NM_001182212.1_Bruggeman | cds-NP_013427.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:760615-761394:- | gene-YLR323C_CAT1 | rna-NM_001182212.1_CAT1 | cds-NP_013427.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:761542-762321:- | gene-YLR323C_CBS1585 | rna-NM_001182212.1_CBS1585 | cds-NP_013427.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:746144-746923:- | gene-YLR323C_CBS436 | rna-NM_001182212.1_CBS436 | cds-NP_013427.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:799497-800276:- | gene-YLR323C_CBS6412 | rna-NM_001182212.1_CBS6412 | cds-NP_013427.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:762214-762993:- | gene-YLR323C_CBS6413 | rna-NM_001182212.1_CBS6413 | cds-NP_013427.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:762787-763566:- | gene-YLR323C_CENPK1137D | rna-NM_001182212.1_CENPK1137D | cds-NP_013427.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:719909-720688:- | gene-YLR323C_EthanolRed | rna-NM_001182212.1_EthanolRed | cds-NP_013427.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:749110-749889:- | gene-YLR323C_FaliES1 | rna-NM_001182212.1_FaliES1 | cds-NP_013427.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:17968-18747:+ | gene-YLR323C_JAY291 | rna-NM_001182212.1_JAY291 | cds-NP_013427.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:761686-762465:- | gene-YLR323C_MUCL30387 | rna-NM_001182212.1_MUCL30387 | cds-NP_013427.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:767271-768050:- | gene-YLR323C_MUCL30388 | rna-NM_001182212.1_MUCL30388 | cds-NP_013427.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:762783-763562:- | gene-YLR323C_MUCL39482 | rna-NM_001182212.1_MUCL39482 | cds-NP_013427.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:757935-758714:- | gene-YLR323C_MUCL42920 | rna-NM_001182212.1_MUCL42920 | cds-NP_013427.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:778147-778926:- | gene-YLR323C_NCIM3186 | rna-NM_001182212.1_NCIM3186 | cds-NP_013427.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:772123-772902:- | gene-YLR323C_NCYC1407 | rna-NM_001182212.1_NCYC1407 | cds-NP_013427.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:759907-760686:- | gene-YLR323C_PE2H3 | rna-NM_001182212.1_PE2H3 | cds-NP_013427.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:759651-760430:- | gene-YLR323C_PE2H4 | rna-NM_001182212.1_PE2H4 | cds-NP_013427.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:778173-778952:- | gene-YLR323C_S288C | rna-NM_001182212.1_S288C | cds-NP_013427.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:5357-6136:+ | gene-YLR323C_SA1 | rna-NM_001182212.1_SA1 | cds-NP_013427.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:751002-751781:- | gene-YLR323C_ThermosaccDry | rna-NM_001182212.1_ThermosaccDry | cds-NP_013427.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:763123-763902:- | gene-YLR323C_VR1 | rna-NM_001182212.1_VR1 | cds-NP_013427.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:89416-90195:- | gene-YLR323C_ZTW1 | rna-NM_001182212.1_ZTW1 | cds-NP_013427.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:737183-737962:- | gene-YLR323C_Sparadoxus | rna-NM_001182212.1_Sparadoxus | cds-NP_013427.1_Sparadoxus | 87.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |