Gene name: CWC23
Reference locus (S288C): YGL128C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor CWC23; Component of a complex containing Cef1p; putatively involved in pre-mRNA splicing; has similarity to E. coli DnaJ and other DnaJ-like proteins and to S. pombe Cwf23p
Top 10 interactors (score): CLF1 (0.999); CEF1 (0.999); PRP19 (0.999); SPP382 (0.998); PRP43 (0.995); PRP46 (0.988); NTR2 (0.978); PRP45 (0.973); SMB1 (0.964); SNU114 (0.964); PRP8 (0.964); YJU2 (0.957); LEA1 (0.955); CWC2 (0.925); SMD2 (0.914); SNT309 (0.91); CWC15 (0.909); YDJ1 (0.901); ERJ5 (0.898); ZUO1 (0.898)
Homologues (species, bitscore): DNAJC5 (Homo sapiens, 58.9); Dnajc5 (Mus musculus, 58.9); dnajc5ga (Danio rerio, 58.5); dnajc5g (Xenopus tropicalis, 54.7); CG17187 (Drosophila melanogaster, 70.1); dnj-17 (Caenorhabditis elegans, 52.0); ATERDJ3B (Arabidopsis thaliana, 55.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:272110-272961:- | gene-YGL128C_AKU4011 | rna-NM_001180993.1_AKU4011 | cds-NP_011387.2_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:132220-133071:+ | gene-YGL128C_BG1 | rna-NM_001180993.1_BG1 | cds-NP_011387.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:274809-275660:- | gene-YGL128C_Bruggeman | rna-NM_001180993.1_Bruggeman | cds-NP_011387.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:270394-271245:- | gene-YGL128C_CAT1 | rna-NM_001180993.1_CAT1 | cds-NP_011387.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:275439-276290:- | gene-YGL128C_CBS1585 | rna-NM_001180993.1_CBS1585 | cds-NP_011387.2_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:270346-271197:- | gene-YGL128C_CBS436 | rna-NM_001180993.1_CBS436 | cds-NP_011387.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:261078-261929:- | gene-YGL128C_CBS6412 | rna-NM_001180993.1_CBS6412 | cds-NP_011387.2_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:270298-271149:- | gene-YGL128C_CBS6413 | rna-NM_001180993.1_CBS6413 | cds-NP_011387.2_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:269552-270403:- | gene-YGL128C_CENPK1137D | rna-NM_001180993.1_CENPK1137D | cds-NP_011387.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:261822-262673:- | gene-YGL128C_EthanolRed | rna-NM_001180993.1_EthanolRed | cds-NP_011387.2_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:263778-264629:- | gene-YGL128C_FaliES1 | rna-NM_001180993.1_FaliES1 | cds-NP_011387.2_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000408.1:4564-5415:+ | gene-YGL128C_JAY291 | rna-NM_001180993.1_JAY291 | cds-NP_011387.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:271779-272630:- | gene-YGL128C_MUCL30387 | rna-NM_001180993.1_MUCL30387 | cds-NP_011387.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:274897-275748:- | gene-YGL128C_MUCL30388 | rna-NM_001180993.1_MUCL30388 | cds-NP_011387.2_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:272523-273374:- | gene-YGL128C_MUCL39482 | rna-NM_001180993.1_MUCL39482 | cds-NP_011387.2_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:275771-276622:- | gene-YGL128C_MUCL42920 | rna-NM_001180993.1_MUCL42920 | cds-NP_011387.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:269293-270144:- | gene-YGL128C_NCIM3186 | rna-NM_001180993.1_NCIM3186 | cds-NP_011387.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:264013-264864:- | gene-YGL128C_NCYC1407 | rna-NM_001180993.1_NCYC1407 | cds-NP_011387.2_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:265401-266252:- | gene-YGL128C_PE2H3 | rna-NM_001180993.1_PE2H3 | cds-NP_011387.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:270399-271250:- | gene-YGL128C_PE2H4 | rna-NM_001180993.1_PE2H4 | cds-NP_011387.2_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:269293-270144:- | gene-YGL128C_S288C | rna-NM_001180993.1_S288C | cds-NP_011387.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:14180-15031:- | gene-YGL128C_SA1 | rna-NM_001180993.1_SA1 | cds-NP_011387.2_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:264007-264858:- | gene-YGL128C_ThermosaccDry | rna-NM_001180993.1_ThermosaccDry | cds-NP_011387.2_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:374131-374982:- | gene-YGL128C_VR1 | rna-NM_001180993.1_VR1 | cds-NP_011387.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:261586-262437:- | gene-YGL128C_ZTW1 | rna-NM_001180993.1_ZTW1 | cds-NP_011387.2_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:267606-268457:- | gene-YGL128C_Sparadoxus | rna-NM_001180993.1_Sparadoxus | cds-NP_011387.2_Sparadoxus | 86.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |