Gene name: CWC21
Reference locus (S288C): YDR482C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor CWC21; Protein involved in RNA splicing by the spliceosome; component of a complex containing Cef1p; interacts genetically with ISY1 and BUD13; may bind RNA; has similarity to S. pombe Cwf21p; Belongs to the CWC21 family
Top 10 interactors (score): PRP19 (0.999); LEA1 (0.999); CWC2 (0.999); SNU114 (0.999); SNT309 (0.999); BRR2 (0.999); PRP8 (0.999); CDC40 (0.999); CEF1 (0.999); PRP22 (0.999); BUD31 (0.999); CWC22 (0.998); PRP45 (0.997); IST3 (0.997); PRP16 (0.996); ISY1 (0.996); PML1 (0.995); SYF2 (0.995); RSE1 (0.994); BUD13 (0.994)
Homologues (species, bitscore): CG7971 (Drosophila melanogaster, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1360352-1360759:- | gene-YDR482C_AKU4011 | rna-NM_001180790.3_AKU4011 | cds-NP_010770.3_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:1963-2370:- | gene-YDR482C_BG1 | rna-NM_001180790.3_BG1 | cds-NP_010770.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1391758-1392165:- | gene-YDR482C_Bruggeman | rna-NM_001180790.3_Bruggeman | cds-NP_010770.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1368906-1369313:- | gene-YDR482C_CAT1 | rna-NM_001180790.3_CAT1 | cds-NP_010770.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1354651-1355058:- | gene-YDR482C_CBS1585 | rna-NM_001180790.3_CBS1585 | cds-NP_010770.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1374008-1374415:- | gene-YDR482C_CBS436 | rna-NM_001180790.3_CBS436 | cds-NP_010770.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1350275-1350682:- | gene-YDR482C_CBS6412 | rna-NM_001180790.3_CBS6412 | cds-NP_010770.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1373286-1373693:- | gene-YDR482C_CBS6413 | rna-NM_001180790.3_CBS6413 | cds-NP_010770.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1419127-1419534:- | gene-YDR482C_CENPK1137D | rna-NM_001180790.3_CENPK1137D | cds-NP_010770.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1363691-1364098:- | gene-YDR482C_EthanolRed | rna-NM_001180790.3_EthanolRed | cds-NP_010770.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1367244-1367651:- | gene-YDR482C_FaliES1 | rna-NM_001180790.3_FaliES1 | cds-NP_010770.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:65499-65906:- | gene-YDR482C_JAY291 | rna-NM_001180790.3_JAY291 | cds-NP_010770.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1374249-1374656:- | gene-YDR482C_MUCL30387 | rna-NM_001180790.3_MUCL30387 | cds-NP_010770.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1356276-1356683:- | gene-YDR482C_MUCL30388 | rna-NM_001180790.3_MUCL30388 | cds-NP_010770.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1346136-1346543:- | gene-YDR482C_MUCL39482 | rna-NM_001180790.3_MUCL39482 | cds-NP_010770.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1288924-1289331:- | gene-YDR482C_MUCL42920 | rna-NM_001180790.3_MUCL42920 | cds-NP_010770.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1420354-1420761:- | gene-YDR482C_NCIM3186 | rna-NM_001180790.3_NCIM3186 | cds-NP_010770.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1359905-1360312:- | gene-YDR482C_NCYC1407 | rna-NM_001180790.3_NCYC1407 | cds-NP_010770.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1370765-1371172:- | gene-YDR482C_PE2H3 | rna-NM_001180790.3_PE2H3 | cds-NP_010770.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1376339-1376746:- | gene-YDR482C_PE2H4 | rna-NM_001180790.3_PE2H4 | cds-NP_010770.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1420431-1420838:- | gene-YDR482C_S288C | rna-NM_001180790.3_S288C | cds-NP_010770.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:196308-196715:+ | gene-YDR482C_SA1 | rna-NM_001180790.3_SA1 | cds-NP_010770.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1371466-1371873:- | gene-YDR482C_ThermosaccDry | rna-NM_001180790.3_ThermosaccDry | cds-NP_010770.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1387210-1387617:- | gene-YDR482C_VR1 | rna-NM_001180790.3_VR1 | cds-NP_010770.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:414132-414539:- | gene-YDR482C_ZTW1 | rna-NM_001180790.3_ZTW1 | cds-NP_010770.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1374249-1374656:- | gene-YDR482C_Sparadoxus | rna-NM_001180790.3_Sparadoxus | cds-NP_010770.3_Sparadoxus | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |