Gene name: CWC2
Reference locus (S288C): YDL209C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor CWC2; Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; binds directly to U6 snRNA; similar to S. pombe Cwf2; Belongs to the RRM CWC2 family
Top 10 interactors (score): SNT309 (0.999); CLF1 (0.999); CDC40 (0.999); SPP2 (0.999); MSL1 (0.999); SMD2 (0.999); CEF1 (0.999); CWC25 (0.999); SMD1 (0.999); BUD13 (0.999); PRP45 (0.999); ECM2 (0.999); PRP46 (0.999); SYF1 (0.999); IST3 (0.999); ISY1 (0.999); BUD31 (0.999); NTC20 (0.999); PRP22 (0.999); CWC21 (0.999)
Homologues (species, bitscore): MAC5A (Arabidopsis thaliana, 60.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:69692-70711:- | gene-YDL209C_AKU4011 | rna-NM_001180269.1_AKU4011 | cds-NP_010072.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000101.1:2866-3885:- | gene-YDL209C_BG1 | rna-NM_001180269.1_BG1 | cds-NP_010072.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:86082-87101:- | gene-YDL209C_Bruggeman | rna-NM_001180269.1_Bruggeman | cds-NP_010072.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:88194-89213:- | gene-YDL209C_CAT1 | rna-NM_001180269.1_CAT1 | cds-NP_010072.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:68544-69563:- | gene-YDL209C_CBS1585 | rna-NM_001180269.1_CBS1585 | cds-NP_010072.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:283447-284466:- | gene-YDL209C_CBS436 | rna-NM_001180269.1_CBS436 | cds-NP_010072.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:68656-69675:- | gene-YDL209C_CBS6412 | rna-NM_001180269.1_CBS6412 | cds-NP_010072.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:86202-87221:- | gene-YDL209C_CBS6413 | rna-NM_001180269.1_CBS6413 | cds-NP_010072.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:84873-85892:- | gene-YDL209C_CENPK1137D | rna-NM_001180269.1_CENPK1137D | cds-NP_010072.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:82340-83359:- | gene-YDL209C_EthanolRed | rna-NM_001180269.1_EthanolRed | cds-NP_010072.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:86945-87964:- | gene-YDL209C_FaliES1 | rna-NM_001180269.1_FaliES1 | cds-NP_010072.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000344.1:31288-32307:+ | gene-YDL209C_JAY291 | rna-NM_001180269.1_JAY291 | cds-NP_010072.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:84315-85334:- | gene-YDL209C_MUCL30387 | rna-NM_001180269.1_MUCL30387 | cds-NP_010072.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:73886-74905:- | gene-YDL209C_MUCL30388 | rna-NM_001180269.1_MUCL30388 | cds-NP_010072.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:69387-70406:- | gene-YDL209C_MUCL39482 | rna-NM_001180269.1_MUCL39482 | cds-NP_010072.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:85466-86485:- | gene-YDL209C_MUCL42920 | rna-NM_001180269.1_MUCL42920 | cds-NP_010072.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:86130-87149:- | gene-YDL209C_NCIM3186 | rna-NM_001180269.1_NCIM3186 | cds-NP_010072.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:69343-70362:- | gene-YDL209C_NCYC1407 | rna-NM_001180269.1_NCYC1407 | cds-NP_010072.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:77086-78105:- | gene-YDL209C_PE2H3 | rna-NM_001180269.1_PE2H3 | cds-NP_010072.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:77096-78115:- | gene-YDL209C_PE2H4 | rna-NM_001180269.1_PE2H4 | cds-NP_010072.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:86207-87226:- | gene-YDL209C_S288C | rna-NM_001180269.1_S288C | cds-NP_010072.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000126.1:2776-3795:- | gene-YDL209C_SA1 | rna-NM_001180269.1_SA1 | cds-NP_010072.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:86709-87728:- | gene-YDL209C_ThermosaccDry | rna-NM_001180269.1_ThermosaccDry | cds-NP_010072.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:87661-88680:- | gene-YDL209C_VR1 | rna-NM_001180269.1_VR1 | cds-NP_010072.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:85388-86407:- | gene-YDL209C_ZTW1 | rna-NM_001180269.1_ZTW1 | cds-NP_010072.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:88721-89746:- | gene-YDL209C_Sparadoxus | rna-NM_001180269.1_Sparadoxus | cds-NP_010072.1_Sparadoxus | 87.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |