Gene name: CUS2
Reference locus (S288C): YNL286W
Gene biotype: protein_coding
Description: Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; regulates toggling of the U2 snRNA stem II region between different structures; contains two RNA recognition motifs (RRMs)
Top 10 interactors (score): HSH155 (0.999); PRP11 (0.996); PRP5 (0.995); LEA1 (0.993); CUS1 (0.991); PRP21 (0.987); YSF3 (0.984); MUD2 (0.979); SMX2 (0.975); HSH49 (0.971); SMX3 (0.96); RSE1 (0.954); CLF1 (0.946); PRP22 (0.933); PRP16 (0.93); PRP28 (0.925); RDS3 (0.925); SUB2 (0.91); SLU7 (0.898); SMD2 (0.89)
Homologues (species, bitscore): HTATSF1 (Homo sapiens, 94.0); Htatsf1 (Mus musculus, 95.5); htatsf1 (Danio rerio, 90.1); htatsf1 (Xenopus tropicalis, 99.4); barc (Drosophila melanogaster, 81.3); Y65B4A.1 (Caenorhabditis elegans, 83.2); ELF9 (Arabidopsis thaliana, 91.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:89033-89890:+ | gene-YNL286W_AKU4011 | rna-NM_001183124.1_AKU4011 | cds-NP_014113.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:748-1605:- | gene-YNL286W_BG1 | rna-NM_001183124.1_BG1 | cds-NP_014113.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:98388-99245:+ | gene-YNL286W_Bruggeman | rna-NM_001183124.1_Bruggeman | cds-NP_014113.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:100988-101845:+ | gene-YNL286W_CAT1 | rna-NM_001183124.1_CAT1 | cds-NP_014113.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:89363-90220:+ | gene-YNL286W_CBS1585 | rna-NM_001183124.1_CBS1585 | cds-NP_014113.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:89860-90717:+ | gene-YNL286W_CBS436 | rna-NM_001183124.1_CBS436 | cds-NP_014113.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:86020-86877:+ | gene-YNL286W_CBS6412 | rna-NM_001183124.1_CBS6412 | cds-NP_014113.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:86211-87068:+ | gene-YNL286W_CBS6413 | rna-NM_001183124.1_CBS6413 | cds-NP_014113.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:89053-89910:+ | gene-YNL286W_CENPK1137D | rna-NM_001183124.1_CENPK1137D | cds-NP_014113.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:86066-86923:+ | gene-YNL286W_EthanolRed | rna-NM_001183124.1_EthanolRed | cds-NP_014113.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:86965-87822:+ | gene-YNL286W_FaliES1 | rna-NM_001183124.1_FaliES1 | cds-NP_014113.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000171.1:404-1262:- | gene-YNL286W_JAY291 | rna-NM_001183124.1_JAY291 | cds-NP_014113.1_JAY291 | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:98897-99754:+ | gene-YNL286W_MUCL30387 | rna-NM_001183124.1_MUCL30387 | cds-NP_014113.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:91667-92524:+ | gene-YNL286W_MUCL30388 | rna-NM_001183124.1_MUCL30388 | cds-NP_014113.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:86997-87854:+ | gene-YNL286W_MUCL39482 | rna-NM_001183124.1_MUCL39482 | cds-NP_014113.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:88696-89553:+ | gene-YNL286W_MUCL42920 | rna-NM_001183124.1_MUCL42920 | cds-NP_014113.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:95192-96049:+ | gene-YNL286W_NCIM3186 | rna-NM_001183124.1_NCIM3186 | cds-NP_014113.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:88329-89186:+ | gene-YNL286W_NCYC1407 | rna-NM_001183124.1_NCYC1407 | cds-NP_014113.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:85535-86392:+ | gene-YNL286W_PE2H3 | rna-NM_001183124.1_PE2H3 | cds-NP_014113.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:84923-85780:+ | gene-YNL286W_PE2H4 | rna-NM_001183124.1_PE2H4 | cds-NP_014113.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:95223-96080:+ | gene-YNL286W_S288C | rna-NM_001183124.1_S288C | cds-NP_014113.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:1143-2000:- | gene-YNL286W_SA1 | rna-NM_001183124.1_SA1 | cds-NP_014113.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:87822-88679:+ | gene-YNL286W_ThermosaccDry | rna-NM_001183124.1_ThermosaccDry | cds-NP_014113.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:100355-101212:+ | gene-YNL286W_VR1 | rna-NM_001183124.1_VR1 | cds-NP_014113.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:79032-79889:+ | gene-YNL286W_ZTW1 | rna-NM_001183124.1_ZTW1 | cds-NP_014113.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:97074-97931:+ | gene-YNL286W_Sparadoxus | rna-NM_001183124.1_Sparadoxus | cds-NP_014113.1_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |