Gene name: CUS1
Reference locus (S288C): YMR240C
Gene biotype: protein_coding
Description: Cold sensitive U2 snRNA suppressor 1; Protein required for assembly of U2 snRNP into the spliceosome; forms a complex with Hsh49p and Hsh155p
Top 10 interactors (score): HSH49 (0.999); LEA1 (0.999); HSH155 (0.999); SMD3 (0.999); SMB1 (0.999); YSF3 (0.999); PRP6 (0.999); CEF1 (0.999); SMD2 (0.999); SNU66 (0.999); PRP9 (0.999); MSL1 (0.999); PRP2 (0.999); BUD31 (0.999); RDS3 (0.999); PRP21 (0.999); SME1 (0.999); IST3 (0.999); SYF1 (0.999); PRP11 (0.999)
Homologues (species, bitscore): SF3B2 (Homo sapiens, 170.6); Sf3b2 (Mus musculus, 170.2); sf3b2 (Danio rerio, 170.2); sf3b2 (Xenopus tropicalis, 174.5); CG3605 (Drosophila melanogaster, 174.1); sftb-2 (Caenorhabditis elegans, 184.9); AT4G21660 (Arabidopsis thaliana, 159.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:789837-791147:- | gene-YMR240C_AKU4011 | rna-NM_001182747.1_AKU4011 | cds-NP_013967.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:163444-164754:+ | gene-YMR240C_BG1 | rna-NM_001182747.1_BG1 | cds-NP_013967.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:734063-735373:- | gene-YMR240C_Bruggeman | rna-NM_001182747.1_Bruggeman | cds-NP_013967.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:737956-739266:- | gene-YMR240C_CAT1 | rna-NM_001182747.1_CAT1 | cds-NP_013967.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:722096-723406:- | gene-YMR240C_CBS1585 | rna-NM_001182747.1_CBS1585 | cds-NP_013967.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:726365-727675:- | gene-YMR240C_CBS436 | rna-NM_001182747.1_CBS436 | cds-NP_013967.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:833658-834968:- | gene-YMR240C_CBS6412 | rna-NM_001182747.1_CBS6412 | cds-NP_013967.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:721249-722559:- | gene-YMR240C_CBS6413 | rna-NM_001182747.1_CBS6413 | cds-NP_013967.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:744673-745983:- | gene-YMR240C_CENPK1137D | rna-NM_001182747.1_CENPK1137D | cds-NP_013967.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:782498-783808:- | gene-YMR240C_EthanolRed | rna-NM_001182747.1_EthanolRed | cds-NP_013967.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:728522-729832:- | gene-YMR240C_FaliES1 | rna-NM_001182747.1_FaliES1 | cds-NP_013967.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:56754-58064:+ | gene-YMR240C_JAY291 | rna-NM_001182747.1_JAY291 | cds-NP_013967.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:727847-729157:- | gene-YMR240C_MUCL30387 | rna-NM_001182747.1_MUCL30387 | cds-NP_013967.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:735074-736384:- | gene-YMR240C_MUCL30388 | rna-NM_001182747.1_MUCL30388 | cds-NP_013967.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:723166-724476:- | gene-YMR240C_MUCL39482 | rna-NM_001182747.1_MUCL39482 | cds-NP_013967.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:730511-731821:- | gene-YMR240C_MUCL42920 | rna-NM_001182747.1_MUCL42920 | cds-NP_013967.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:749884-751194:- | gene-YMR240C_NCIM3186 | rna-NM_001182747.1_NCIM3186 | cds-NP_013967.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:722823-724133:- | gene-YMR240C_NCYC1407 | rna-NM_001182747.1_NCYC1407 | cds-NP_013967.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:732703-734013:- | gene-YMR240C_PE2H3 | rna-NM_001182747.1_PE2H3 | cds-NP_013967.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:733721-735031:- | gene-YMR240C_PE2H4 | rna-NM_001182747.1_PE2H4 | cds-NP_013967.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:749930-751240:- | gene-YMR240C_S288C | rna-NM_001182747.1_S288C | cds-NP_013967.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:56871-58181:+ | gene-YMR240C_SA1 | rna-NM_001182747.1_SA1 | cds-NP_013967.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:724693-726003:- | gene-YMR240C_ThermosaccDry | rna-NM_001182747.1_ThermosaccDry | cds-NP_013967.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:737238-738548:- | gene-YMR240C_VR1 | rna-NM_001182747.1_VR1 | cds-NP_013967.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:139829-141139:- | gene-YMR240C_ZTW1 | rna-NM_001182747.1_ZTW1 | cds-NP_013967.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:742488-743807:- | gene-YMR240C_Sparadoxus | rna-NM_001182747.1_Sparadoxus | cds-NP_013967.1_Sparadoxus | 85.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |