Gene name: CUB1
Reference locus (S288C): YPL260W
Gene biotype: protein_coding
Description: UPF0662 protein YPL260W; Conserved fungal gene linked to DNA repair and proteasome function; putative substrate of cAMP-dependent protein kinase (PKA); green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YPL260W is not an essential gene; protein abundance increases in response to DNA replication stress; Belongs to the UPF0662 family
Top 10 interactors (score): PUF3 (0.766); YLR456W (0.766); MDS3 (0.618); VRG4 (0.499); DOC1 (0.497); YBR116C (0.489); YLR173W (0.454); YPL119C-A (0.452); YGR153W (0.452); YLR462W (0.45); MRPL19 (0.45); MNC1 (0.45); YKL107W (0.45); YLR012C (0.45); RTK1 (0.445)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:33603-35258:+ | gene-YPL260W_AKU4011 | rna-NM_001184074.1_AKU4011 | cds-NP_015063.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000185.1:5534-7189:- | gene-YPL260W_BG1 | rna-NM_001184074.1_BG1 | cds-NP_015063.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:50854-52509:+ | gene-YPL260W_Bruggeman | rna-NM_001184074.1_Bruggeman | cds-NP_015063.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:48805-50460:+ | gene-YPL260W_CAT1 | rna-NM_001184074.1_CAT1 | cds-NP_015063.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:37312-38967:+ | gene-YPL260W_CBS1585 | rna-NM_001184074.1_CBS1585 | cds-NP_015063.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:45705-47360:+ | gene-YPL260W_CBS436 | rna-NM_001184074.1_CBS436 | cds-NP_015063.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:42216-43871:+ | gene-YPL260W_CBS6412 | rna-NM_001184074.1_CBS6412 | cds-NP_015063.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:33463-35118:+ | gene-YPL260W_CBS6413 | rna-NM_001184074.1_CBS6413 | cds-NP_015063.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:49252-50907:+ | gene-YPL260W_CENPK1137D | rna-NM_001184074.1_CENPK1137D | cds-NP_015063.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:32649-34304:+ | gene-YPL260W_EthanolRed | rna-NM_001184074.1_EthanolRed | cds-NP_015063.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:32997-34652:+ | gene-YPL260W_FaliES1 | rna-NM_001184074.1_FaliES1 | cds-NP_015063.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000190.1:5448-7103:- | gene-YPL260W_JAY291 | rna-NM_001184074.1_JAY291 | cds-NP_015063.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:50111-51766:+ | gene-YPL260W_MUCL30387 | rna-NM_001184074.1_MUCL30387 | cds-NP_015063.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:48315-49970:+ | gene-YPL260W_MUCL30388 | rna-NM_001184074.1_MUCL30388 | cds-NP_015063.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:30442-32097:+ | gene-YPL260W_MUCL39482 | rna-NM_001184074.1_MUCL39482 | cds-NP_015063.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:42604-44259:+ | gene-YPL260W_MUCL42920 | rna-NM_001184074.1_MUCL42920 | cds-NP_015063.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:49286-50941:+ | gene-YPL260W_NCIM3186 | rna-NM_001184074.1_NCIM3186 | cds-NP_015063.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:36888-38543:+ | gene-YPL260W_NCYC1407 | rna-NM_001184074.1_NCYC1407 | cds-NP_015063.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:40532-42187:+ | gene-YPL260W_PE2H3 | rna-NM_001184074.1_PE2H3 | cds-NP_015063.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:40518-42173:+ | gene-YPL260W_PE2H4 | rna-NM_001184074.1_PE2H4 | cds-NP_015063.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:49303-50958:+ | gene-YPL260W_S288C | rna-NM_001184074.1_S288C | cds-NP_015063.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000104.1:5571-7226:- | gene-YPL260W_SA1 | rna-NM_001184074.1_SA1 | cds-NP_015063.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:32998-34653:+ | gene-YPL260W_ThermosaccDry | rna-NM_001184074.1_ThermosaccDry | cds-NP_015063.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:279395-281050:+ | gene-YPL260W_VR1 | rna-NM_001184074.1_VR1 | cds-NP_015063.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:39116-40771:+ | gene-YPL260W_ZTW1 | rna-NM_001184074.1_ZTW1 | cds-NP_015063.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:40919-42571:+ | gene-YPL260W_Sparadoxus | rna-NM_001184074.1_Sparadoxus | cds-NP_015063.1_Sparadoxus | 91.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |