Gene name: CTR9
Reference locus (S288C): YOL145C
Gene biotype: protein_coding
Description: RNA polymerase-associated protein CTR9; Component of the Paf1p complex involved in transcription elongation; binds to and modulates the activity of RNA polymerases I and II; required for expression of a subset of genes, including cyclin genes; involved in SER3 repression by helping to maintain SRG1 transcription-dependent nucleosome occupancy; contains TPR repeats
Top 10 interactors (score): RPO21 (0.999); LEO1 (0.999); CDC73 (0.999); RTF1 (0.999); SPT5 (0.999); PAF1 (0.999); SPT16 (0.999); SKI8 (0.999); SPT6 (0.997); POB3 (0.994); RPB3 (0.994); RPB4 (0.984); SPT4 (0.982); CHS5 (0.981); YFR016C (0.981); DST1 (0.967); SET2 (0.965); BRE1 (0.946); SET1 (0.945); RPB2 (0.933)
Homologues (species, bitscore): CTR9 (Homo sapiens, 199.1); Ctr9 (Mus musculus, 193.0); ctr9 (Danio rerio, 184.5); ctr9 (Xenopus tropicalis, 116.3); CG2469 (Drosophila melanogaster, 200.7); B0464.2 (Caenorhabditis elegans, 145.6); ELF8 (Arabidopsis thaliana, 185.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:38204-41437:- | gene-YOL145C_AKU4011 | rna-NM_001183399.2_AKU4011 | cds-NP_014496.2_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:3839-7072:- | gene-YOL145C_BG1 | rna-NM_001183399.2_BG1 | cds-NP_014496.2_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:39506-42739:- | gene-YOL145C_Bruggeman | rna-NM_001183399.2_Bruggeman | cds-NP_014496.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:38203-41436:- | gene-YOL145C_CAT1 | rna-NM_001183399.2_CAT1 | cds-NP_014496.2_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:32671-35904:- | gene-YOL145C_CBS1585 | rna-NM_001183399.2_CBS1585 | cds-NP_014496.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:38529-41762:- | gene-YOL145C_CBS436 | rna-NM_001183399.2_CBS436 | cds-NP_014496.2_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:32573-35806:- | gene-YOL145C_CBS6412 | rna-NM_001183399.2_CBS6412 | cds-NP_014496.2_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:39019-42252:- | gene-YOL145C_CBS6413 | rna-NM_001183399.2_CBS6413 | cds-NP_014496.2_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:49453-52686:- | gene-YOL145C_CENPK1137D | rna-NM_001183399.2_CENPK1137D | cds-NP_014496.2_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:36484-39717:- | gene-YOL145C_EthanolRed | rna-NM_001183399.2_EthanolRed | cds-NP_014496.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:38507-41740:- | gene-YOL145C_FaliES1 | rna-NM_001183399.2_FaliES1 | cds-NP_014496.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:40828-44061:+ | gene-YOL145C_JAY291 | rna-NM_001183399.2_JAY291 | cds-NP_014496.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:44127-47360:- | gene-YOL145C_MUCL30387 | rna-NM_001183399.2_MUCL30387 | cds-NP_014496.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:47137-50370:- | gene-YOL145C_MUCL30388 | rna-NM_001183399.2_MUCL30388 | cds-NP_014496.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:40601-43834:- | gene-YOL145C_MUCL39482 | rna-NM_001183399.2_MUCL39482 | cds-NP_014496.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:56532-59765:- | gene-YOL145C_MUCL42920 | rna-NM_001183399.2_MUCL42920 | cds-NP_014496.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:49444-52677:- | gene-YOL145C_NCIM3186 | rna-NM_001183399.2_NCIM3186 | cds-NP_014496.2_NCIM3186 | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:46682-49915:- | gene-YOL145C_NCYC1407 | rna-NM_001183399.2_NCYC1407 | cds-NP_014496.2_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:25078-28311:- | gene-YOL145C_PE2H3 | rna-NM_001183399.2_PE2H3 | cds-NP_014496.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:42026-45259:- | gene-YOL145C_PE2H4 | rna-NM_001183399.2_PE2H4 | cds-NP_014496.2_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:49555-52788:- | gene-YOL145C_S288C | rna-NM_001183399.2_S288C | cds-NP_014496.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:22937-26170:- | gene-YOL145C_SA1 | rna-NM_001183399.2_SA1 | cds-NP_014496.2_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:37650-40883:- | gene-YOL145C_ThermosaccDry | rna-NM_001183399.2_ThermosaccDry | cds-NP_014496.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:38300-41533:- | gene-YOL145C_VR1 | rna-NM_001183399.2_VR1 | cds-NP_014496.2_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:37406-40639:- | gene-YOL145C_ZTW1 | rna-NM_001183399.2_ZTW1 | cds-NP_014496.2_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:39926-43159:- | gene-YOL145C_Sparadoxus | rna-NM_001183399.2_Sparadoxus | cds-NP_014496.2_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |