Gene name: CTR86
Reference locus (S288C): YCR054C
Gene biotype: protein_coding
Description: Copper transport protein 86; Essential protein of unknown function; with orthologs in Ashbya gossypii and Candida albicans; similar to human ATXN10, mutations in which cause spinocerebellar ataxia type 10; codon usage corresponds to that observed for yeast genes expressed at low levels; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): GCN4 (0.841); THR4 (0.761); NOP56 (0.552); SGF73 (0.54); ARG1 (0.536); YFH1 (0.53); SWA2 (0.528); CDC55 (0.486); HEM2 (0.469)
Homologues (species, bitscore): ATXN10 (Homo sapiens, 72.4); Atxn10 (Mus musculus, 68.9); atxn10 (Danio rerio, 75.5); atxn10 (Xenopus tropicalis, 74.7); MEE50 (Arabidopsis thaliana, 70.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:212834-214525:- | gene-YCR054C_AKU4011 | rna-NM_001178768.1_AKU4011 | cds-NP_009983.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:67037-68728:- | gene-YCR054C_BG1 | rna-NM_001178768.1_BG1 | cds-NP_009983.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:208794-210485:- | gene-YCR054C_Bruggeman | rna-NM_001178768.1_Bruggeman | cds-NP_009983.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:220167-221858:- | gene-YCR054C_CAT1 | rna-NM_001178768.1_CAT1 | cds-NP_009983.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:207612-209303:- | gene-YCR054C_CBS1585 | rna-NM_001178768.1_CBS1585 | cds-NP_009983.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:219508-221199:- | gene-YCR054C_CBS436 | rna-NM_001178768.1_CBS436 | cds-NP_009983.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:199352-201043:- | gene-YCR054C_CBS6412 | rna-NM_001178768.1_CBS6412 | cds-NP_009983.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:213729-215420:- | gene-YCR054C_CBS6413 | rna-NM_001178768.1_CBS6413 | cds-NP_009983.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:217558-219249:- | gene-YCR054C_CENPK1137D | rna-NM_001178768.1_CENPK1137D | cds-NP_009983.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:208797-210488:- | gene-YCR054C_EthanolRed | rna-NM_001178768.1_EthanolRed | cds-NP_009983.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:213962-215653:- | gene-YCR054C_FaliES1 | rna-NM_001178768.1_FaliES1 | cds-NP_009983.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000014.1:7527-9218:+ | gene-YCR054C_JAY291 | rna-NM_001178768.1_JAY291 | cds-NP_009983.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:205778-207469:- | gene-YCR054C_MUCL30387 | rna-NM_001178768.1_MUCL30387 | cds-NP_009983.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:205152-206843:- | gene-YCR054C_MUCL30388 | rna-NM_001178768.1_MUCL30388 | cds-NP_009983.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:214185-215876:- | gene-YCR054C_MUCL39482 | rna-NM_001178768.1_MUCL39482 | cds-NP_009983.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:210627-212318:- | gene-YCR054C_MUCL42920 | rna-NM_001178768.1_MUCL42920 | cds-NP_009983.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:218008-219699:- | gene-YCR054C_NCIM3186 | rna-NM_001178768.1_NCIM3186 | cds-NP_009983.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:215044-216735:- | gene-YCR054C_NCYC1407 | rna-NM_001178768.1_NCYC1407 | cds-NP_009983.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:223722-225413:- | gene-YCR054C_PE2H3 | rna-NM_001178768.1_PE2H3 | cds-NP_009983.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:218248-219939:- | gene-YCR054C_PE2H4 | rna-NM_001178768.1_PE2H4 | cds-NP_009983.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:218376-220067:- | gene-YCR054C_S288C | rna-NM_001178768.1_S288C | cds-NP_009983.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:18259-19950:- | gene-YCR054C_SA1 | rna-NM_001178768.1_SA1 | cds-NP_009983.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:213945-215636:- | gene-YCR054C_ThermosaccDry | rna-NM_001178768.1_ThermosaccDry | cds-NP_009983.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:225220-226911:- | gene-YCR054C_VR1 | rna-NM_001178768.1_VR1 | cds-NP_009983.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:211768-213459:- | gene-YCR054C_ZTW1 | rna-NM_001178768.1_ZTW1 | cds-NP_009983.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:245926-247617:- | gene-YCR054C_Sparadoxus | rna-NM_001178768.1_Sparadoxus | cds-NP_009983.1_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |