Gene name: CTR1
Reference locus (S288C): YPR124W
Gene biotype: protein_coding
Description: Solute carrier family 31 (copper transporter), member 1; High-affinity copper transporter of plasma membrane; mediates nearly all copper uptake under low copper conditions; transcriptionally induced at low copper levels and degraded at high copper levels; protein increases in abundance and relocalizes from nucleus to plasma membrane upon DNA replication stress; human homolog SLC31A1 can complement a yeast ctr1 ctr3 double deletion
Top 10 interactors (score): CTR3 (0.864); YDR131C (0.816); HEL1 (0.77); YPR123C (0.758); CTR2 (0.755); YER135C (0.749); PCI8 (0.711); YEL1 (0.699); YMR310C (0.698); MUK1 (0.693); GTO3 (0.691); SPS4 (0.691); FUN26 (0.671); PUF3 (0.669); HAL9 (0.65); FRE6 (0.619); SPO1 (0.575); NUP170 (0.574); NTH2 (0.529); CCC1 (0.485)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:757697-759112:+ | gene-YPR124W_AKU4011 | rna-NM_001184221.1_AKU4011 | cds-NP_015449.1_AKU4011 | 85.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:138253-139473:- | gene-YPR124W_BG1 | rna-NM_001184221.1_BG1 | cds-NP_015449.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:838398-839765:+ | gene-YPR124W_Bruggeman | rna-NM_001184221.1_Bruggeman | cds-NP_015449.1_Bruggeman | 89.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:880221-881690:+ | gene-YPR124W_CAT1 | rna-NM_001184221.1_CAT1 | cds-NP_015449.1_CAT1 | 81.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:761954-763369:+ | gene-YPR124W_CBS1585 | rna-NM_001184221.1_CBS1585 | cds-NP_015449.1_CBS1585 | 85.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:776594-777844:+ | gene-YPR124W_CBS436 | rna-NM_001184221.1_CBS436 | cds-NP_015449.1_CBS436 | 97.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:764677-766092:+ | gene-YPR124W_CBS6412 | rna-NM_001184221.1_CBS6412 | cds-NP_015449.1_CBS6412 | 85.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:759400-760815:+ | gene-YPR124W_CBS6413 | rna-NM_001184221.1_CBS6413 | cds-NP_015449.1_CBS6413 | 85.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:786232-787452:+ | gene-YPR124W_CENPK1137D | rna-NM_001184221.1_CENPK1137D | cds-NP_015449.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1079864-1081279:+ | gene-YPR124W_EthanolRed | rna-NM_001184221.1_EthanolRed | cds-NP_015449.1_EthanolRed | 85.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:759411-760826:+ | gene-YPR124W_FaliES1 | rna-NM_001184221.1_FaliES1 | cds-NP_015449.1_FaliES1 | 85.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000036.1:16883-18103:+ | gene-YPR124W_JAY291 | rna-NM_001184221.1_JAY291 | cds-NP_015449.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:778589-779956:+ | gene-YPR124W_MUCL30387 | rna-NM_001184221.1_MUCL30387 | cds-NP_015449.1_MUCL30387 | 89.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:778288-779922:+ | gene-YPR124W_MUCL30388 | rna-NM_001184221.1_MUCL30388 | cds-NP_015449.1_MUCL30388 | 74.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:754461-755876:+ | gene-YPR124W_MUCL39482 | rna-NM_001184221.1_MUCL39482 | cds-NP_015449.1_MUCL39482 | 85.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:818489-819676:+ | gene-YPR124W_MUCL42920 | rna-NM_001184221.1_MUCL42920 | cds-NP_015449.1_MUCL42920 | 96.4 | 97.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:786191-787411:+ | gene-YPR124W_NCIM3186 | rna-NM_001184221.1_NCIM3186 | cds-NP_015449.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:763054-764469:+ | gene-YPR124W_NCYC1407 | rna-NM_001184221.1_NCYC1407 | cds-NP_015449.1_NCYC1407 | 85.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:769971-771191:+ | gene-YPR124W_PE2H3 | rna-NM_001184221.1_PE2H3 | cds-NP_015449.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:769619-770839:+ | gene-YPR124W_PE2H4 | rna-NM_001184221.1_PE2H4 | cds-NP_015449.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:786208-787428:+ | gene-YPR124W_S288C | rna-NM_001184221.1_S288C | cds-NP_015449.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:84004-85224:+ | gene-YPR124W_SA1 | rna-NM_001184221.1_SA1 | cds-NP_015449.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:758856-760271:+ | gene-YPR124W_ThermosaccDry | rna-NM_001184221.1_ThermosaccDry | cds-NP_015449.1_ThermosaccDry | 85.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:780619-782097:+ | gene-YPR124W_VR1 | rna-NM_001184221.1_VR1 | cds-NP_015449.1_VR1 | 81.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:762839-764026:+ | gene-YPR124W_ZTW1 | rna-NM_001184221.1_ZTW1 | cds-NP_015449.1_ZTW1 | 96.3 | 97.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:764734-765972:+ | gene-YPR124W_Sparadoxus | rna-NM_001184221.1_Sparadoxus | cds-NP_015449.1_Sparadoxus | 83.4 | 97.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |