Gene name: CTO1
Reference locus (S288C): YCR015C
Gene biotype: protein_coding
Description: UPF0655 protein YCR015C; Protein required for cold tolerance; involved in phosphate uptake; YCR015C is not an essential gene; Belongs to the UPF0655 family
Top 10 interactors (score): TRS31 (0.886); NAB3 (0.804); YCL068C (0.776); YDR042C (0.752); GTR2 (0.748); YCL001W-B (0.747); HEM4 (0.697); YCL049C (0.696); SEN1 (0.659); ARC40 (0.645); SRD1 (0.613); YCR024C-B (0.61); YCL042W (0.61); SOL2 (0.596); NSG2 (0.575); PER1 (0.571); FEN2 (0.568); REF2 (0.564); PTA1 (0.563); TAF2 (0.499)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:135588-136541:- | gene-YCR015C_AKU4011 | rna-NM_001178728.1_AKU4011 | cds-NP_009941.2_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:9462-10415:+ | gene-YCR015C_BG1 | rna-NM_001178728.1_BG1 | cds-NP_009941.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:131403-132356:- | gene-YCR015C_Bruggeman | rna-NM_001178728.1_Bruggeman | cds-NP_009941.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:141805-142758:- | gene-YCR015C_CAT1 | rna-NM_001178728.1_CAT1 | cds-NP_009941.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:136238-137191:- | gene-YCR015C_CBS1585 | rna-NM_001178728.1_CBS1585 | cds-NP_009941.2_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:141500-142453:- | gene-YCR015C_CBS436 | rna-NM_001178728.1_CBS436 | cds-NP_009941.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:123698-124651:- | gene-YCR015C_CBS6412 | rna-NM_001178728.1_CBS6412 | cds-NP_009941.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:135545-136498:- | gene-YCR015C_CBS6413 | rna-NM_001178728.1_CBS6413 | cds-NP_009941.2_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:146694-147647:- | gene-YCR015C_CENPK1137D | rna-NM_001178728.1_CENPK1137D | cds-NP_009941.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:133606-134559:- | gene-YCR015C_EthanolRed | rna-NM_001178728.1_EthanolRed | cds-NP_009941.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:135904-136857:- | gene-YCR015C_FaliES1 | rna-NM_001178728.1_FaliES1 | cds-NP_009941.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000126.1:50077-51030:- | gene-YCR015C_JAY291 | rna-NM_001178728.1_JAY291 | cds-NP_009941.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:129208-130161:- | gene-YCR015C_MUCL30387 | rna-NM_001178728.1_MUCL30387 | cds-NP_009941.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:128180-129133:- | gene-YCR015C_MUCL30388 | rna-NM_001178728.1_MUCL30388 | cds-NP_009941.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:136655-137608:- | gene-YCR015C_MUCL39482 | rna-NM_001178728.1_MUCL39482 | cds-NP_009941.2_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:131893-132846:- | gene-YCR015C_MUCL42920 | rna-NM_001178728.1_MUCL42920 | cds-NP_009941.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:140849-141802:- | gene-YCR015C_NCIM3186 | rna-NM_001178728.1_NCIM3186 | cds-NP_009941.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:137386-138339:- | gene-YCR015C_NCYC1407 | rna-NM_001178728.1_NCYC1407 | cds-NP_009941.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:141336-142289:- | gene-YCR015C_PE2H3 | rna-NM_001178728.1_PE2H3 | cds-NP_009941.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:141275-142228:- | gene-YCR015C_PE2H4 | rna-NM_001178728.1_PE2H4 | cds-NP_009941.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:141217-142170:- | gene-YCR015C_S288C | rna-NM_001178728.1_S288C | cds-NP_009941.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000073.1:9499-10452:+ | gene-YCR015C_SA1 | rna-NM_001178728.1_SA1 | cds-NP_009941.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:136472-137425:- | gene-YCR015C_ThermosaccDry | rna-NM_001178728.1_ThermosaccDry | cds-NP_009941.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:147405-148358:- | gene-YCR015C_VR1 | rna-NM_001178728.1_VR1 | cds-NP_009941.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:135407-136360:- | gene-YCR015C_ZTW1 | rna-NM_001178728.1_ZTW1 | cds-NP_009941.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:167565-168518:- | gene-YCR015C_Sparadoxus | rna-NM_001178728.1_Sparadoxus | cds-NP_009941.2_Sparadoxus | 85.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |