Gene name: CTL1
Reference locus (S288C): YMR180C
Gene biotype: protein_coding
Description: RNA 5'-triphosphatase, localizes to both the nucleus and cytoplasm; CTL1 has a paralog, CET1, that arose from the whole genome duplication; Belongs to the fungal TPase family
Top 10 interactors (score): CEG1 (0.895); YRF1-1 (0.745); SPS18 (0.715); YRF1-8 (0.715); YSP3 (0.699); YRF1-3 (0.695); CET1 (0.687); YRF1-5 (0.67); RFS1 (0.658); YRF1-6 (0.655); YRF1-7 (0.633); YRF1-4 (0.62); HFA1 (0.619); YRF1-2 (0.618); THP2 (0.574); YBR134W (0.569); IST1 (0.565); YGL152C (0.56); KDX1 (0.527); PST2 (0.526)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:662193-663155:- | gene-YMR180C_AKU4011 | rna-NM_001182686.1_AKU4011 | cds-NP_013905.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:9979-10941:+ | gene-YMR180C_BG1 | rna-NM_001182686.1_BG1 | cds-NP_013905.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:606429-607391:- | gene-YMR180C_Bruggeman | rna-NM_001182686.1_Bruggeman | cds-NP_013905.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:609166-610128:- | gene-YMR180C_CAT1 | rna-NM_001182686.1_CAT1 | cds-NP_013905.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:594461-595423:- | gene-YMR180C_CBS1585 | rna-NM_001182686.1_CBS1585 | cds-NP_013905.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:598704-599666:- | gene-YMR180C_CBS436 | rna-NM_001182686.1_CBS436 | cds-NP_013905.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000065.1:80-1042:- | gene-YMR180C_CBS6412 | rna-NM_001182686.1_CBS6412 | cds-NP_013905.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:593601-594563:- | gene-YMR180C_CBS6413 | rna-NM_001182686.1_CBS6413 | cds-NP_013905.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:616797-617759:- | gene-YMR180C_CENPK1137D | rna-NM_001182686.1_CENPK1137D | cds-NP_013905.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:654824-655786:- | gene-YMR180C_EthanolRed | rna-NM_001182686.1_EthanolRed | cds-NP_013905.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:599762-600724:- | gene-YMR180C_FaliES1 | rna-NM_001182686.1_FaliES1 | cds-NP_013905.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000265.1:9806-10768:+ | gene-YMR180C_JAY291 | rna-NM_001182686.1_JAY291 | cds-NP_013905.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:599975-600937:- | gene-YMR180C_MUCL30387 | rna-NM_001182686.1_MUCL30387 | cds-NP_013905.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:606755-607717:- | gene-YMR180C_MUCL30388 | rna-NM_001182686.1_MUCL30388 | cds-NP_013905.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:595511-596473:- | gene-YMR180C_MUCL39482 | rna-NM_001182686.1_MUCL39482 | cds-NP_013905.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:602874-603836:- | gene-YMR180C_MUCL42920 | rna-NM_001182686.1_MUCL42920 | cds-NP_013905.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:622205-623167:- | gene-YMR180C_NCIM3186 | rna-NM_001182686.1_NCIM3186 | cds-NP_013905.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:595168-596130:- | gene-YMR180C_NCYC1407 | rna-NM_001182686.1_NCYC1407 | cds-NP_013905.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:605041-606003:- | gene-YMR180C_PE2H3 | rna-NM_001182686.1_PE2H3 | cds-NP_013905.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:606026-606988:- | gene-YMR180C_PE2H4 | rna-NM_001182686.1_PE2H4 | cds-NP_013905.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:622251-623213:- | gene-YMR180C_S288C | rna-NM_001182686.1_S288C | cds-NP_013905.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:184902-185864:+ | gene-YMR180C_SA1 | rna-NM_001182686.1_SA1 | cds-NP_013905.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:596418-597380:- | gene-YMR180C_ThermosaccDry | rna-NM_001182686.1_ThermosaccDry | cds-NP_013905.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:609591-610553:- | gene-YMR180C_VR1 | rna-NM_001182686.1_VR1 | cds-NP_013905.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:12206-13168:- | gene-YMR180C_ZTW1 | rna-NM_001182686.1_ZTW1 | cds-NP_013905.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:614368-615330:- | gene-YMR180C_Sparadoxus | rna-NM_001182686.1_Sparadoxus | cds-NP_013905.1_Sparadoxus | 81.6 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |