Gene name: CTK3
Reference locus (S288C): YML112W
Gene biotype: protein_coding
Description: Gamma subunit of C-terminal domain kinase I; CTDK-I phosphorylates RNA polymerase II subunit Rpo21p to affect transcription and pre-mRNA 3' end processing, and also phosphorylates ribosomal protein Rps2p to increase translational fidelity; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): CTK1 (0.999); CTK2 (0.999); BUR2 (0.934); RPO21 (0.919); PHO85 (0.903); PHO80 (0.903); CKS1 (0.901); TFB5 (0.901); PCL8 (0.9); TFB6 (0.9); SSL1 (0.9); KIN28 (0.9); PCL6 (0.9); TFB2 (0.9); TFB1 (0.9); CCL1 (0.9); CDC28 (0.9); RAD3 (0.9); TFB4 (0.9); SSL2 (0.9)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:38762-39652:+ | gene-YML112W_AKU4011 | rna-NM_001182474.1_AKU4011 | cds-NP_013595.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:436527-437417:- | gene-YML112W_BG1 | rna-NM_001182474.1_BG1 | cds-NP_013595.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:45041-45931:+ | gene-YML112W_Bruggeman | rna-NM_001182474.1_Bruggeman | cds-NP_013595.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:46583-47473:+ | gene-YML112W_CAT1 | rna-NM_001182474.1_CAT1 | cds-NP_013595.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:38759-39649:+ | gene-YML112W_CBS1585 | rna-NM_001182474.1_CBS1585 | cds-NP_013595.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:44770-45660:+ | gene-YML112W_CBS436 | rna-NM_001182474.1_CBS436 | cds-NP_013595.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:39523-40413:+ | gene-YML112W_CBS6412 | rna-NM_001182474.1_CBS6412 | cds-NP_013595.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:37988-38878:+ | gene-YML112W_CBS6413 | rna-NM_001182474.1_CBS6413 | cds-NP_013595.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:39572-40462:+ | gene-YML112W_CENPK1137D | rna-NM_001182474.1_CENPK1137D | cds-NP_013595.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:39278-40168:+ | gene-YML112W_EthanolRed | rna-NM_001182474.1_EthanolRed | cds-NP_013595.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:39554-40444:+ | gene-YML112W_FaliES1 | rna-NM_001182474.1_FaliES1 | cds-NP_013595.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:49741-50631:- | gene-YML112W_JAY291 | rna-NM_001182474.1_JAY291 | cds-NP_013595.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:43491-44381:+ | gene-YML112W_MUCL30387 | rna-NM_001182474.1_MUCL30387 | cds-NP_013595.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:46711-47601:+ | gene-YML112W_MUCL30388 | rna-NM_001182474.1_MUCL30388 | cds-NP_013595.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:38775-39665:+ | gene-YML112W_MUCL39482 | rna-NM_001182474.1_MUCL39482 | cds-NP_013595.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:42934-43824:+ | gene-YML112W_MUCL42920 | rna-NM_001182474.1_MUCL42920 | cds-NP_013595.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:45017-45907:+ | gene-YML112W_NCIM3186 | rna-NM_001182474.1_NCIM3186 | cds-NP_013595.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:39570-40460:+ | gene-YML112W_NCYC1407 | rna-NM_001182474.1_NCYC1407 | cds-NP_013595.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:45011-45901:+ | gene-YML112W_PE2H3 | rna-NM_001182474.1_PE2H3 | cds-NP_013595.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:44949-45839:+ | gene-YML112W_PE2H4 | rna-NM_001182474.1_PE2H4 | cds-NP_013595.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:45063-45953:+ | gene-YML112W_S288C | rna-NM_001182474.1_S288C | cds-NP_013595.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:36999-37889:+ | gene-YML112W_SA1 | rna-NM_001182474.1_SA1 | cds-NP_013595.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:38853-39743:+ | gene-YML112W_ThermosaccDry | rna-NM_001182474.1_ThermosaccDry | cds-NP_013595.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:43244-44134:+ | gene-YML112W_VR1 | rna-NM_001182474.1_VR1 | cds-NP_013595.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:18332-19222:+ | gene-YML112W_ZTW1 | rna-NM_001182474.1_ZTW1 | cds-NP_013595.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:49844-50725:+ | gene-YML112W_Sparadoxus | rna-NM_001182474.1_Sparadoxus | cds-NP_013595.1_Sparadoxus | 88.0 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |