Gene name: CTK2
Reference locus (S288C): YJL006C
Gene biotype: protein_coding
Description: Beta subunit of C-terminal domain kinase I (CTDK-I); which phosphorylates both RNA pol II subunit Rpo21p to affect transcription and pre-mRNA 3' end processing, and ribosomal protein Rps2p to increase translational fidelity; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): SGV1 (0.999); CTK1 (0.999); CTK3 (0.999); KIN28 (0.996); SPT5 (0.993); RPO21 (0.993); CCL1 (0.981); TFB3 (0.978); PHO85 (0.977); SSN3 (0.975); CDC28 (0.974); BUR2 (0.959); CKS1 (0.957); PHO80 (0.956); CLB1 (0.948); CLN2 (0.948); SSL2 (0.944); DST1 (0.94); TFB4 (0.933); CDC73 (0.932)
Homologues (species, bitscore): CCNK (Homo sapiens, 67.0); Ccnk (Mus musculus, 66.6); ccnk (Danio rerio, 68.6); ccnk (Xenopus tropicalis, 65.5); CycK (Drosophila melanogaster, 53.5); CYCT1;4 (Arabidopsis thaliana, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:406292-407263:- | gene-YJL006C_AKU4011 | rna-NM_001181440.1_AKU4011 | cds-NP_012528.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:205472-206443:+ | gene-YJL006C_BG1 | rna-NM_001181440.1_BG1 | cds-NP_012528.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:420376-421347:- | gene-YJL006C_Bruggeman | rna-NM_001181440.1_Bruggeman | cds-NP_012528.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:424331-425302:- | gene-YJL006C_CAT1 | rna-NM_001181440.1_CAT1 | cds-NP_012528.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:417879-418850:- | gene-YJL006C_CBS1585 | rna-NM_001181440.1_CBS1585 | cds-NP_012528.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:436842-437813:- | gene-YJL006C_CBS436 | rna-NM_001181440.1_CBS436 | cds-NP_012528.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:406106-407077:- | gene-YJL006C_CBS6412 | rna-NM_001181440.1_CBS6412 | cds-NP_012528.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:408318-409289:- | gene-YJL006C_CBS6413 | rna-NM_001181440.1_CBS6413 | cds-NP_012528.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:405558-406529:- | gene-YJL006C_CENPK1137D | rna-NM_001181440.1_CENPK1137D | cds-NP_012528.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:411254-412225:- | gene-YJL006C_EthanolRed | rna-NM_001181440.1_EthanolRed | cds-NP_012528.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:422398-423369:- | gene-YJL006C_FaliES1 | rna-NM_001181440.1_FaliES1 | cds-NP_012528.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000338.1:497-1468:+ | gene-YJL006C_JAY291 | rna-NM_001181440.1_JAY291 | cds-NP_012528.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:420715-421686:- | gene-YJL006C_MUCL30387 | rna-NM_001181440.1_MUCL30387 | cds-NP_012528.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:417270-418241:- | gene-YJL006C_MUCL30388 | rna-NM_001181440.1_MUCL30388 | cds-NP_012528.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:411196-412167:- | gene-YJL006C_MUCL39482 | rna-NM_001181440.1_MUCL39482 | cds-NP_012528.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:416650-417621:- | gene-YJL006C_MUCL42920 | rna-NM_001181440.1_MUCL42920 | cds-NP_012528.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:423117-424088:- | gene-YJL006C_NCIM3186 | rna-NM_001181440.1_NCIM3186 | cds-NP_012528.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:409109-410080:- | gene-YJL006C_NCYC1407 | rna-NM_001181440.1_NCYC1407 | cds-NP_012528.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:421595-422566:- | gene-YJL006C_PE2H3 | rna-NM_001181440.1_PE2H3 | cds-NP_012528.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:421204-422175:- | gene-YJL006C_PE2H4 | rna-NM_001181440.1_PE2H4 | cds-NP_012528.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:423138-424109:- | gene-YJL006C_S288C | rna-NM_001181440.1_S288C | cds-NP_012528.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:219131-220102:- | gene-YJL006C_SA1 | rna-NM_001181440.1_SA1 | cds-NP_012528.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:416056-417027:- | gene-YJL006C_ThermosaccDry | rna-NM_001181440.1_ThermosaccDry | cds-NP_012528.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:417751-418722:- | gene-YJL006C_VR1 | rna-NM_001181440.1_VR1 | cds-NP_012528.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:396066-397037:- | gene-YJL006C_ZTW1 | rna-NM_001181440.1_ZTW1 | cds-NP_012528.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:420981-421952:- | gene-YJL006C_Sparadoxus | rna-NM_001181440.1_Sparadoxus | cds-NP_012528.1_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |