Gene name: CTI6
Reference locus (S288C): YPL181W
Gene biotype: protein_coding
Description: Component of the Rpd3L histone deacetylase complex; relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain
Top 10 interactors (score): PHO23 (0.999); RXT2 (0.998); RPD3 (0.998); SDS3 (0.997); RXT3 (0.997); UME1 (0.997); SIN3 (0.994); SAP30 (0.989); DEP1 (0.987); EAF3 (0.987); ASH1 (0.984); UME6 (0.977); RCO1 (0.977); CYC8 (0.974); SET3 (0.966); SIF2 (0.961); DOT6 (0.949); HOS2 (0.949); SNT1 (0.944); TOD6 (0.941)
Homologues (species, bitscore): KMT2E (Homo sapiens, 62.0); Phf20l1 (Mus musculus, 62.4); phf20l1 (Danio rerio, 61.2); phf20 (Xenopus tropicalis, 66.6); upSET (Drosophila melanogaster, 66.6); C16A11.4 (Caenorhabditis elegans, 54.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:181424-182944:+ | gene-YPL181W_AKU4011 | rna-NM_001183995.1_AKU4011 | cds-NP_015144.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:387036-388556:+ | gene-YPL181W_BG1 | rna-NM_001183995.1_BG1 | cds-NP_015144.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:207270-208790:+ | gene-YPL181W_Bruggeman | rna-NM_001183995.1_Bruggeman | cds-NP_015144.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:203613-205133:+ | gene-YPL181W_CAT1 | rna-NM_001183995.1_CAT1 | cds-NP_015144.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:185490-187010:+ | gene-YPL181W_CBS1585 | rna-NM_001183995.1_CBS1585 | cds-NP_015144.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:200146-201666:+ | gene-YPL181W_CBS436 | rna-NM_001183995.1_CBS436 | cds-NP_015144.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:190159-191682:+ | gene-YPL181W_CBS6412 | rna-NM_001183995.1_CBS6412 | cds-NP_015144.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:181642-183162:+ | gene-YPL181W_CBS6413 | rna-NM_001183995.1_CBS6413 | cds-NP_015144.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:203303-204823:+ | gene-YPL181W_CENPK1137D | rna-NM_001183995.1_CENPK1137D | cds-NP_015144.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:180166-181686:+ | gene-YPL181W_EthanolRed | rna-NM_001183995.1_EthanolRed | cds-NP_015144.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:187758-189278:+ | gene-YPL181W_FaliES1 | rna-NM_001183995.1_FaliES1 | cds-NP_015144.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:176623-178143:- | gene-YPL181W_JAY291 | rna-NM_001183995.1_JAY291 | cds-NP_015144.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:198652-200172:+ | gene-YPL181W_MUCL30387 | rna-NM_001183995.1_MUCL30387 | cds-NP_015144.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:196671-198191:+ | gene-YPL181W_MUCL30388 | rna-NM_001183995.1_MUCL30388 | cds-NP_015144.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:178819-180339:+ | gene-YPL181W_MUCL39482 | rna-NM_001183995.1_MUCL39482 | cds-NP_015144.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:235499-237019:+ | gene-YPL181W_MUCL42920 | rna-NM_001183995.1_MUCL42920 | cds-NP_015144.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:203404-204924:+ | gene-YPL181W_NCIM3186 | rna-NM_001183995.1_NCIM3186 | cds-NP_015144.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:185271-186794:+ | gene-YPL181W_NCYC1407 | rna-NM_001183995.1_NCYC1407 | cds-NP_015144.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:192713-194233:+ | gene-YPL181W_PE2H3 | rna-NM_001183995.1_PE2H3 | cds-NP_015144.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:192356-193876:+ | gene-YPL181W_PE2H4 | rna-NM_001183995.1_PE2H4 | cds-NP_015144.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:203421-204941:+ | gene-YPL181W_S288C | rna-NM_001183995.1_S288C | cds-NP_015144.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:168405-169925:- | gene-YPL181W_SA1 | rna-NM_001183995.1_SA1 | cds-NP_015144.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:187556-189076:+ | gene-YPL181W_ThermosaccDry | rna-NM_001183995.1_ThermosaccDry | cds-NP_015144.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:202486-204006:+ | gene-YPL181W_VR1 | rna-NM_001183995.1_VR1 | cds-NP_015144.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:186885-188405:+ | gene-YPL181W_ZTW1 | rna-NM_001183995.1_ZTW1 | cds-NP_015144.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:188492-190024:+ | gene-YPL181W_Sparadoxus | rna-NM_001183995.1_Sparadoxus | cds-NP_015144.1_Sparadoxus | 85.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |