Gene name: CTH1
Reference locus (S288C): YDR151C
Gene biotype: protein_coding
Description: mRNA decay factor CTH1; Member of the CCCH zinc finger family; similar to mammalian Tis11 protein, which activates transcription and also has a role in mRNA degradation; may function with Tis11p in iron homeostasis; CTH1 has a paralog, TIS11, that arose from the whole genome duplication
Top 10 interactors (score): CDC39 (0.917); ARI1 (0.893); YDR541C (0.813); GRE2 (0.753); POP2 (0.678); TIS11 (0.656); HEK2 (0.582); PHO92 (0.579); SGN1 (0.572); MTR4 (0.546); MOT2 (0.507); SNU23 (0.481); MGA2 (0.478); IOC2 (0.477); PAP1 (0.471); YTH1 (0.457); DHH1 (0.44); ESS1 (0.428); GDE1 (0.418); PBP2 (0.415)
Homologues (species, bitscore): ZFP36L1 (Homo sapiens, 86.3); Zfp36l3 (Mus musculus, 88.6); sb:cb81 (Danio rerio, 89.4); zfp36l1 (Xenopus tropicalis, 86.7); Tis11 (Drosophila melanogaster, 89.4); ccch-1 (Caenorhabditis elegans, 79.3); AT1G66810 (Arabidopsis thaliana, 67.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:735495-736472:- | gene-YDR151C_AKU4011 | rna-NM_001180458.1_AKU4011 | cds-NP_010435.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:390279-391256:+ | gene-YDR151C_BG1 | rna-NM_001180458.1_BG1 | cds-NP_010435.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:766992-767969:- | gene-YDR151C_Bruggeman | rna-NM_001180458.1_Bruggeman | cds-NP_010435.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:754282-755259:- | gene-YDR151C_CAT1 | rna-NM_001180458.1_CAT1 | cds-NP_010435.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:725863-726840:- | gene-YDR151C_CBS1585 | rna-NM_001180458.1_CBS1585 | cds-NP_010435.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:752037-753014:- | gene-YDR151C_CBS436 | rna-NM_001180458.1_CBS436 | cds-NP_010435.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:721349-722326:- | gene-YDR151C_CBS6412 | rna-NM_001180458.1_CBS6412 | cds-NP_010435.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:749761-750738:- | gene-YDR151C_CBS6413 | rna-NM_001180458.1_CBS6413 | cds-NP_010435.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:764860-765837:- | gene-YDR151C_CENPK1137D | rna-NM_001180458.1_CENPK1137D | cds-NP_010435.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:735319-736296:- | gene-YDR151C_EthanolRed | rna-NM_001180458.1_EthanolRed | cds-NP_010435.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:743531-744508:- | gene-YDR151C_FaliES1 | rna-NM_001180458.1_FaliES1 | cds-NP_010435.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000401.1:4448-5425:- | gene-YDR151C_JAY291 | rna-NM_001180458.1_JAY291 | cds-NP_010435.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:751963-752940:- | gene-YDR151C_MUCL30387 | rna-NM_001180458.1_MUCL30387 | cds-NP_010435.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:740880-741857:- | gene-YDR151C_MUCL30388 | rna-NM_001180458.1_MUCL30388 | cds-NP_010435.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:727290-728267:- | gene-YDR151C_MUCL39482 | rna-NM_001180458.1_MUCL39482 | cds-NP_010435.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:665120-666097:- | gene-YDR151C_MUCL42920 | rna-NM_001180458.1_MUCL42920 | cds-NP_010435.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:764101-765078:- | gene-YDR151C_NCIM3186 | rna-NM_001180458.1_NCIM3186 | cds-NP_010435.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:726695-727672:- | gene-YDR151C_NCYC1407 | rna-NM_001180458.1_NCYC1407 | cds-NP_010435.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:745887-746864:- | gene-YDR151C_PE2H3 | rna-NM_001180458.1_PE2H3 | cds-NP_010435.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:745192-746169:- | gene-YDR151C_PE2H4 | rna-NM_001180458.1_PE2H4 | cds-NP_010435.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:764178-765155:- | gene-YDR151C_S288C | rna-NM_001180458.1_S288C | cds-NP_010435.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:111398-112375:- | gene-YDR151C_SA1 | rna-NM_001180458.1_SA1 | cds-NP_010435.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:741666-742643:- | gene-YDR151C_ThermosaccDry | rna-NM_001180458.1_ThermosaccDry | cds-NP_010435.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:756596-757573:- | gene-YDR151C_VR1 | rna-NM_001180458.1_VR1 | cds-NP_010435.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:4421-5397:- | gene-YDR151C_ZTW1 | rna-NM_001180458.1_ZTW1 | cds-NP_010435.1_ZTW1 | 99.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:747953-748930:- | gene-YDR151C_Sparadoxus | rna-NM_001180458.1_Sparadoxus | cds-NP_010435.1_Sparadoxus | 86.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |