Gene name: CTF4
Reference locus (S288C): YPR135W
Gene biotype: protein_coding
Description: Chromosome transmission fidelity protein 4; DNA polymerase alpha-binding protein; Chromatin-associated protein; required for sister chromatid cohesion; interacts with DNA polymerase alpha (Pol1p) and may link DNA synthesis to sister chromatid cohesion
Top 10 interactors (score): DNA2 (0.999); MCM6 (0.999); MCM2 (0.999); MCM7 (0.999); PSF3 (0.999); PSF2 (0.999); POL1 (0.999); CTF18 (0.999); SLD5 (0.999); MRC1 (0.999); MCM4 (0.999); MCM5 (0.999); PSF1 (0.999); DCC1 (0.999); TOF1 (0.999); MCM3 (0.999); CDC45 (0.999); CSM3 (0.999); MCM10 (0.999); POL2 (0.998)
Homologues (species, bitscore): WDHD1 (Homo sapiens, 104.0); Wdhd1 (Mus musculus, 79.7); wdhd1 (Danio rerio, 82.4); wdhd1 (Xenopus tropicalis, 87.0); Ctf4 (Drosophila melanogaster, 58.9); AT3G42660 (Arabidopsis thaliana, 100.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:770921-773704:+ | gene-YPR135W_AKU4011 | rna-NM_001184232.1_AKU4011 | cds-NP_015461.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:123662-126445:- | gene-YPR135W_BG1 | rna-NM_001184232.1_BG1 | cds-NP_015461.1_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:851571-854354:+ | gene-YPR135W_Bruggeman | rna-NM_001184232.1_Bruggeman | cds-NP_015461.1_Bruggeman | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:893486-896269:+ | gene-YPR135W_CAT1 | rna-NM_001184232.1_CAT1 | cds-NP_015461.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:775177-777960:+ | gene-YPR135W_CBS1585 | rna-NM_001184232.1_CBS1585 | cds-NP_015461.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:789650-792433:+ | gene-YPR135W_CBS436 | rna-NM_001184232.1_CBS436 | cds-NP_015461.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:777901-780684:+ | gene-YPR135W_CBS6412 | rna-NM_001184232.1_CBS6412 | cds-NP_015461.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:772623-775406:+ | gene-YPR135W_CBS6413 | rna-NM_001184232.1_CBS6413 | cds-NP_015461.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:799289-802072:+ | gene-YPR135W_CENPK1137D | rna-NM_001184232.1_CENPK1137D | cds-NP_015461.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1093087-1095870:+ | gene-YPR135W_EthanolRed | rna-NM_001184232.1_EthanolRed | cds-NP_015461.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:772634-775417:+ | gene-YPR135W_FaliES1 | rna-NM_001184232.1_FaliES1 | cds-NP_015461.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000036.1:29911-32694:+ | gene-YPR135W_JAY291 | rna-NM_001184232.1_JAY291 | cds-NP_015461.1_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:791762-794545:+ | gene-YPR135W_MUCL30387 | rna-NM_001184232.1_MUCL30387 | cds-NP_015461.1_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:791727-794510:+ | gene-YPR135W_MUCL30388 | rna-NM_001184232.1_MUCL30388 | cds-NP_015461.1_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:767685-770468:+ | gene-YPR135W_MUCL39482 | rna-NM_001184232.1_MUCL39482 | cds-NP_015461.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:831482-834265:+ | gene-YPR135W_MUCL42920 | rna-NM_001184232.1_MUCL42920 | cds-NP_015461.1_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:799217-802000:+ | gene-YPR135W_NCIM3186 | rna-NM_001184232.1_NCIM3186 | cds-NP_015461.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:776278-779061:+ | gene-YPR135W_NCYC1407 | rna-NM_001184232.1_NCYC1407 | cds-NP_015461.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:782999-785782:+ | gene-YPR135W_PE2H3 | rna-NM_001184232.1_PE2H3 | cds-NP_015461.1_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:782647-785430:+ | gene-YPR135W_PE2H4 | rna-NM_001184232.1_PE2H4 | cds-NP_015461.1_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:799234-802017:+ | gene-YPR135W_S288C | rna-NM_001184232.1_S288C | cds-NP_015461.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:97031-99814:+ | gene-YPR135W_SA1 | rna-NM_001184232.1_SA1 | cds-NP_015461.1_SA1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:772079-774862:+ | gene-YPR135W_ThermosaccDry | rna-NM_001184232.1_ThermosaccDry | cds-NP_015461.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:793903-796686:+ | gene-YPR135W_VR1 | rna-NM_001184232.1_VR1 | cds-NP_015461.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:775834-778617:+ | gene-YPR135W_ZTW1 | rna-NM_001184232.1_ZTW1 | cds-NP_015461.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:777790-780570:+ | gene-YPR135W_Sparadoxus | rna-NM_001184232.1_Sparadoxus | cds-NP_015461.1_Sparadoxus | 89.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |