Gene name: CTF3
Reference locus (S288C): YLR381W
Gene biotype: protein_coding
Description: Central kinetochore subunit CTF3; Outer kinetochore protein that forms a complex with Mcm16p and Mcm22p; may bind the kinetochore to spindle microtubules; required for the spindle assembly checkpoint; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-I and fission yeast mis6
Top 10 interactors (score): MCM16 (0.999); MCM22 (0.998); CTF19 (0.997); IML3 (0.997); CHL4 (0.996); MCM21 (0.994); OKP1 (0.994); NKP1 (0.99); AME1 (0.989); CNN1 (0.988); NKP2 (0.983); DSN1 (0.977); WIP1 (0.972); CSE4 (0.971); CHL1 (0.924); MTW1 (0.912); MIF2 (0.905); RAD61 (0.891); HHF1 (0.889); NSL1 (0.878)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:829259-831460:+ | gene-YLR381W_AKU4011 | rna-NM_001182270.1_AKU4011 | cds-NP_013485.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:61433-63634:+ | gene-YLR381W_BG1 | rna-NM_001182270.1_BG1 | cds-NP_013485.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:867562-869763:+ | gene-YLR381W_Bruggeman | rna-NM_001182270.1_Bruggeman | cds-NP_013485.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:863085-865286:+ | gene-YLR381W_CAT1 | rna-NM_001182270.1_CAT1 | cds-NP_013485.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:864853-867054:+ | gene-YLR381W_CBS1585 | rna-NM_001182270.1_CBS1585 | cds-NP_013485.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:848491-850692:+ | gene-YLR381W_CBS436 | rna-NM_001182270.1_CBS436 | cds-NP_013485.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:901275-903468:+ | gene-YLR381W_CBS6412 | rna-NM_001182270.1_CBS6412 | cds-NP_013485.1_CBS6412 | 89.5 | 96.2 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:865144-867345:+ | gene-YLR381W_CBS6413 | rna-NM_001182270.1_CBS6413 | cds-NP_013485.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:864464-866665:+ | gene-YLR381W_CENPK1137D | rna-NM_001182270.1_CENPK1137D | cds-NP_013485.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:821986-824187:+ | gene-YLR381W_EthanolRed | rna-NM_001182270.1_EthanolRed | cds-NP_013485.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:851109-853310:+ | gene-YLR381W_FaliES1 | rna-NM_001182270.1_FaliES1 | cds-NP_013485.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:4266-6467:+ | gene-YLR381W_JAY291 | rna-NM_001182270.1_JAY291 | cds-NP_013485.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:866073-868274:+ | gene-YLR381W_MUCL30387 | rna-NM_001182270.1_MUCL30387 | cds-NP_013485.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:872516-874717:+ | gene-YLR381W_MUCL30388 | rna-NM_001182270.1_MUCL30388 | cds-NP_013485.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:866073-868274:+ | gene-YLR381W_MUCL39482 | rna-NM_001182270.1_MUCL39482 | cds-NP_013485.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:860732-862933:+ | gene-YLR381W_MUCL42920 | rna-NM_001182270.1_MUCL42920 | cds-NP_013485.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:879697-881898:+ | gene-YLR381W_NCIM3186 | rna-NM_001182270.1_NCIM3186 | cds-NP_013485.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:875255-877456:+ | gene-YLR381W_NCYC1407 | rna-NM_001182270.1_NCYC1407 | cds-NP_013485.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:861645-863846:+ | gene-YLR381W_PE2H3 | rna-NM_001182270.1_PE2H3 | cds-NP_013485.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:861389-863590:+ | gene-YLR381W_PE2H4 | rna-NM_001182270.1_PE2H4 | cds-NP_013485.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:879723-881924:+ | gene-YLR381W_S288C | rna-NM_001182270.1_S288C | cds-NP_013485.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:166769-168970:- | gene-YLR381W_SA1 | rna-NM_001182270.1_SA1 | cds-NP_013485.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:854188-856389:+ | gene-YLR381W_ThermosaccDry | rna-NM_001182270.1_ThermosaccDry | cds-NP_013485.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:866735-868936:+ | gene-YLR381W_VR1 | rna-NM_001182270.1_VR1 | cds-NP_013485.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:190907-193108:+ | gene-YLR381W_ZTW1 | rna-NM_001182270.1_ZTW1 | cds-NP_013485.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:839584-841785:+ | gene-YLR381W_Sparadoxus | rna-NM_001182270.1_Sparadoxus | cds-NP_013485.1_Sparadoxus | 86.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |