Gene name: CTF18
Reference locus (S288C): YMR078C
Gene biotype: protein_coding
Description: Chromosome transmission fidelity protein 18; Subunit of a complex with Ctf8p; shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint; Belongs to the activator 1 small subunits family. CTF18 subfamily
Top 10 interactors (score): CTF8 (0.999); RFC3 (0.999); DCC1 (0.999); RFC5 (0.999); CTF4 (0.999); POL2 (0.999); ELG1 (0.998); ECO1 (0.998); DPB2 (0.997); TOF1 (0.997); POL1 (0.995); RFC4 (0.995); CHL1 (0.995); SMC3 (0.995); RAD24 (0.995); RFC2 (0.993); POL30 (0.993); CDC45 (0.993); POL12 (0.988); CSM3 (0.986)
Homologues (species, bitscore): CHTF18 (Homo sapiens, 188.3); Chtf18 (Mus musculus, 184.1); chtf18 (Danio rerio, 206.8); chtf18 (Xenopus tropicalis, 201.1); cutlet (Drosophila melanogaster, 163.7); ctf-18 (Caenorhabditis elegans, 157.1); CTF18 (Arabidopsis thaliana, 172.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:460449-462674:- | gene-YMR078C_AKU4011 | rna-NM_001182577.1_AKU4011 | cds-NP_013795.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:80350-82575:+ | gene-YMR078C_BG1 | rna-NM_001182577.1_BG1 | cds-NP_013795.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:402627-404852:- | gene-YMR078C_Bruggeman | rna-NM_001182577.1_Bruggeman | cds-NP_013795.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:402943-405168:- | gene-YMR078C_CAT1 | rna-NM_001182577.1_CAT1 | cds-NP_013795.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:393389-395614:- | gene-YMR078C_CBS1585 | rna-NM_001182577.1_CBS1585 | cds-NP_013795.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:398704-400929:- | gene-YMR078C_CBS436 | rna-NM_001182577.1_CBS436 | cds-NP_013795.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:506463-508688:- | gene-YMR078C_CBS6412 | rna-NM_001182577.1_CBS6412 | cds-NP_013795.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:392646-394871:- | gene-YMR078C_CBS6413 | rna-NM_001182577.1_CBS6413 | cds-NP_013795.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:416608-418833:- | gene-YMR078C_CENPK1137D | rna-NM_001182577.1_CENPK1137D | cds-NP_013795.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:393281-395506:- | gene-YMR078C_EthanolRed | rna-NM_001182577.1_EthanolRed | cds-NP_013795.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:396447-398672:- | gene-YMR078C_FaliES1 | rna-NM_001182577.1_FaliES1 | cds-NP_013795.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:38551-40776:+ | gene-YMR078C_JAY291 | rna-NM_001182577.1_JAY291 | cds-NP_013795.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:398361-400586:- | gene-YMR078C_MUCL30387 | rna-NM_001182577.1_MUCL30387 | cds-NP_013795.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:403047-405272:- | gene-YMR078C_MUCL30388 | rna-NM_001182577.1_MUCL30388 | cds-NP_013795.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:393677-395902:- | gene-YMR078C_MUCL39482 | rna-NM_001182577.1_MUCL39482 | cds-NP_013795.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:400364-402589:- | gene-YMR078C_MUCL42920 | rna-NM_001182577.1_MUCL42920 | cds-NP_013795.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:422457-424682:- | gene-YMR078C_NCIM3186 | rna-NM_001182577.1_NCIM3186 | cds-NP_013795.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:393592-395817:- | gene-YMR078C_NCYC1407 | rna-NM_001182577.1_NCYC1407 | cds-NP_013795.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:399303-401528:- | gene-YMR078C_PE2H3 | rna-NM_001182577.1_PE2H3 | cds-NP_013795.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:405398-407623:- | gene-YMR078C_PE2H4 | rna-NM_001182577.1_PE2H4 | cds-NP_013795.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:422503-424728:- | gene-YMR078C_S288C | rna-NM_001182577.1_S288C | cds-NP_013795.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:125441-127666:+ | gene-YMR078C_SA1 | rna-NM_001182577.1_SA1 | cds-NP_013795.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:394250-396475:- | gene-YMR078C_ThermosaccDry | rna-NM_001182577.1_ThermosaccDry | cds-NP_013795.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:405888-408113:- | gene-YMR078C_VR1 | rna-NM_001182577.1_VR1 | cds-NP_013795.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:370527-372752:- | gene-YMR078C_ZTW1 | rna-NM_001182577.1_ZTW1 | cds-NP_013795.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:406935-409160:- | gene-YMR078C_Sparadoxus | rna-NM_001182577.1_Sparadoxus | cds-NP_013795.1_Sparadoxus | 88.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |